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Revision as of 10:28, 1 February 2016



An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Haight M, Jacobs HR, Boltey SK, Murray KA, Hartwell M
US Public Interest in Merkel Cell Carcinoma Following Jimmy Buffett's Death and Implications for Continued Health Advocacy: Infodemiology Study of Google Trends.
JMIR Dermatol: 2024 Oct 31, 7;e60282
[PubMed:39481118] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Vivion M, Trottier V, Bouhêlier È, Goupil-Sormany I, Diallo T
Misinformation About Climate Change and Related Environmental Events on Social Media: Protocol for a Scoping Review.
JMIR Res Protoc: 2024 Oct 31, 13;e59345
[PubMed:39481105] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Groppi E, Haddad M, Cristofoli V, Vansteelandt M, Gadea A
Unveiling the Substrate-Dependent Dynamics of Mycotoxin Production in Fusarium verticillioides Using an OSMAC-Metabolomics Approach.
Chem Biodivers: 2024 Oct 31;e202401747
[PubMed:39481006] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Singh A, Kumar M, Bhalla V
Regulating the Twisted Intramolecular Charge Transfer and Anti-heavy Atom Effect at Supramolecular Level for Favorable Photosensitizing Activity in Water.
ACS Appl Mater Interfaces: 2024 Oct 31;
[PubMed:39481003] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Somerstein R
From baby blues to depressionBlue: A History of Postpartum Depression in America Rachel Louise Moran The University of Chicago Press, 2024. 304 pp.
Science: 2024 Nov, 386(6721);500
[PubMed:39480922] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Cai C, Hazaea SA, Alsayegh MF, Sahu M, Raid M, Al-Ahdal WM
Media coverage as a moderator in the nexus between audit quality and ESG performance: Evidence from China.
PLoS One: 2024, 19(10);e0312510
[PubMed:39480816] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zhuang M, Cheng D, Lu X, Tan X
Postgraduate psychological stress detection from social media using BERT-Fused model.
PLoS One: 2024, 19(10);e0312264
[PubMed:39480765] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Potvin Kent M, Pritchard M, Mulligan C, Remedios L
Normalizing junk food: The frequency and reach of posts related to food and beverage brands on social media.
PLOS Digit Health: 2024 Oct, 3(10);e0000630
[PubMed:39480749] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zanardo M, Ambrogi F, Asmundo L, Cardani R, Cirillo G, Colarieti A, Cozzi A, Cressoni M, Dambra I, Di Leo G, Monti CB, Nicotera L, Pomati F, Renna LV, Secchi F, Versuraro M, Vitali P, Sardanelli F
The GREENWATER study: patients' green sensitivity and potential recovery of injected contrast agents.
Eur Radiol: 2024 Oct 31;
[PubMed:39480535] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sinha S, Callow BW, Farfel AP, Roy S, Chen S, Masotti M, Rajendran S, Buschhaus JM, Espinoza CR, Luker KE, Ghosh P, Luker GD
Breast cancers that disseminate to bone marrow acquire aggressive phenotypes through CX43-related tumor-stroma tunnels.
J Clin Invest: 2024 Oct 31;
[PubMed:39480488] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Paudel N, Brady L, Stratieva P, Galvin O, Lui B, Van den Brande I, Malkowski JP, Rebeira M, MacAllister S, O'Riordan T, Daly A
Economic Burden of Late-Stage Age-Related Macular Degeneration in Bulgaria, Germany, and the US.
JAMA Ophthalmol: 2024 Oct 31;
[PubMed:39480444] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rohrich RJ, Chiodo MV, Lisiecki JL
Finesse in Primary Open Rhinoplasty.
Plast Reconstr Surg: 2024 Nov 1, 154(5);891e-894e
[PubMed:39480256] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Zhao S, Peng J, Meng C, Wei S, Kang Z, Chen K, Zhao S, Yuan B, Li P, Hou Y, Xia D, Niu QJ
Ultrafast Water Transport of Reverse Osmosis Membrane Based on Quasi-Vertically Oriented 2D Interlayer.
Nano Lett: 2024 Oct 31;
[PubMed:39480247] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gupta M, Ladegard K, Gupta N, Khurana P, Krasner A
Antecedents and Trajectories of the Child and Adolescent Mental Health Crisis: Assimilating Empirically Guided Pathways for Stakeholders.
Prim Care Companion CNS Disord: 2024 Oct 24, 26(5);
[PubMed:39480159] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Joseph PL, Fleary SA
Designing Health Interventions to Meet the Needs and Experiences of Minoritized Adolescents: #DoubleTap4Health.
Health Educ Behav: 2024 Oct 31;10901981241292313
[PubMed:39480138] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Shilkin DA, Ha ST, Paniagua-Domínguez R, Kuznetsov AI
Ultrafast Modulation of a Nonlocal Semiconductor Metasurface under Spatially Selective Optical Pumping.
Nano Lett: 2024 Oct 31;
[PubMed:39480066] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang J, Chen Y, Li MG, Sun Z, Meng Z, Wong WY
Fabrication of Ultrafine L1(0)-FePt-Based Magnetic Patterns Enabled by Single-Step Nanoimprint-Assisted Block Copolymer Self-Assembly.
Nano Lett: 2024 Oct 31;
[PubMed:39480060] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Cheng T, Naughton GK, Makino ET, Kadoya K, Maitra P
Regenerative Skincare Technologies Derived From Human Fibroblasts: Growth Factors and Exosomes for Transformative Outcomes.
Dermatol Surg: 2024 Nov 1, 50(11S);S139-S144
[PubMed:39480036] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Lamenha-Lins R, Paiva SM, Mattos FF, Bastos JL, Serra-Negra JM
Camouflaged prejudice and the affirmation of skin colour differences: assessment of racism among Brazilian undergraduate dental students.
Acta Odontol Latinoam: 2024 Sep 30, 37(2);134-143
[PubMed:39479978] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Chernokal B, Ferrick BJ, Gleghorn JP
Zonal patterning of extracellular matrix and stromal cell populations along a perfusable cellular microchannel.
Lab Chip: 2024 Oct 30;
[PubMed:39479925] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yang HM, Yu X, Zou X, Ma SF, Chen J, Zhang JW
[Analysis of RhC Antigen Weak Expression Combined with Mimicking Autoanti-Ce and Homologous Anti-Jkb Causing Mismatch].
Zhongguo Shi Yan Xue Ye Xue Za Zhi: 2024 Oct, 32(5);1539-1544
[PubMed:39479844] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Mattioni G, Rebei M, Kovacs E, Boddaert G, Menassa M, Duclos C, Mariolo AV
Thoracoscopic non-anatomical lung segmentectomy for intralobar pulmonary sequestration using a 3-dimensional model and indocyanine green.
Multimed Man Cardiothorac Surg: 2024 Oct 30, 2024;
[PubMed:39479760] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yoldaş T, Kaya GS, Parmaksız A, Işıklar H, Günalan E
Nutritional analysis of vegan recipes: From social media to plate.
Food Sci Nutr: 2024 Oct, 12(10);7657-7670
[PubMed:39479681] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chinbat O, Erdenetsog P, Tuvshintur B, Gantumur A, Burenjargal M, Chimeddorj B, Janlav M
In vitro and in vivo investigation of the biological action of xylooligosaccharides derived from industrial waste.
Food Sci Nutr: 2024 Oct, 12(10);7877-7884
[PubMed:39479607] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ahmed S, Hulbert AK, Xin X, Neff MM
The ability of Arabidopsis to recover from Basta and its application in isolating Cas9-free mutants.
Front Plant Sci: 2024, 15;1408230
[PubMed:39479542] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Badr MM, Youssef WM, Elgammal EM, Hussien AEM, Taha MH
Recovery of uranium using epoxy-modified phosphorus pentasulfide as an efficient adsorbent for uranium extraction from aquatic environments.
RSC Adv: 2024 Oct 29, 14(47);34526-34536
[PubMed:39479485] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Tafere TZ, Teshale G, Jejaw M, Demissie KA, Baffa LD, Geberu DM, Tiruneh MG, Hagos A
Less than one in five teenage women in Ethiopia know about emergency contraception.
Front Glob Womens Health: 2024, 5;1437375
[PubMed:39479467] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Scorzo AV, Byrd BK, Kwon CY, Strawbridge RR, Samkoe KS, Hoopes PJ, Paulsen KD, Roberts DW, Davis SC
Whole-body fluorescence cryotomography identifies a fast-acting, high-contrast, durable contrast agent for fluorescence-guided surgery.
Theranostics: 2024, 14(17);6426-6445
[PubMed:39479457] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yang M, Wang L, Qin S, Dai X, Li J, An L, Song L, Gao J, Han Z, Yu F
Role of damaged mitochondrial transfer in alpha-particle generator (212)Pb radiation-induced bystander effect.
Theranostics: 2024, 14(17);6768-6782
[PubMed:39479441] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Nishanth S, Babu R, Arunaa S, Prasad DA, Shanthi M, Sekar U
Microbial Colonization Pattern of Indwelling Double J Stents in Children.
J Indian Assoc Pediatr Surg: 2024 Sep-Oct, 29(5);524-528
[PubMed:39479409] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Guan X, Fan Y, Six R, Benedetti C, Raes A, Fernandez Montoro A, Cui X, Azari Dolatabad N, Van Soom A, Pavani KC, Peelman L
Bta-miR-665 improves bovine blastocyst development through its influence on microtubule dynamics and apoptosis.
Front Genet: 2024, 15;1437695
[PubMed:39479397] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chambers RJ, Rajput BS, Scofield GB, Reindel J, O'Shea K, Li RJ, Simkovsky R, Mayfield SP, Burkart MD, Cai S
Mechanically Robust and Biodegradable Electrospun Membranes Made from Bioderived Thermoplastic Polyurethane and Polylactic Acid.
ACS Appl Polym Mater: 2024 Oct 25, 6(20);12528-12537
[PubMed:39479343] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Houle SKD, Luk S
News Media Reports of Respiratory Syncytial Virus in Canada and the United States During the 2022-2023 Respiratory Virus Season: A Cross-Sectional Study.
Health Sci Rep: 2024 Nov, 7(11);e70146
[PubMed:39479285] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Singh A, Chaudhury S, Chaudhari B
Impact of Social Media Addiction Among Medical Students on Their Social Interaction, Well-Being, and Personality: A Comparative Study.
Cureus: 2024 Sep, 16(9);e70526
[PubMed:39479064] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Foyet M, Child B
COVID-19, social media, algorithms and the rise of indigenous movements in Southern Africa: perspectives from activists, audiences and policymakers.
Front Sociol: 2024, 9;1433998
[PubMed:39478954] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Biz M, Schubert M
Perceptions of celebrity athletes involved in social cause endorsement.
Front Sports Act Living: 2024, 6;1415382
[PubMed:39478831] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Khan Z, Adil T, Oduoye MO, Khan BS, Ayyazuddin M
Assessing the knowledge, attitude and perception of Extended Reality (XR) technology in Pakistan's Healthcare community in an era of Artificial Intelligence.
Front Med (Lausanne): 2024, 11;1456017
[PubMed:39478829] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Tian X
How life circumstances during public health crises affect people to share and correct misinformation: a perspective of the third-person effect.
Front Psychol: 2024, 15;1418504
[PubMed:39478793] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Feriani P, Yunitasari E, Efendi F, Krisnana I, Ernawati R, Tianingrum NA, Safaah N
A Systematic Review of Determinants Influencing Family Planning and Contraceptive Use.
Iran J Nurs Midwifery Res: 2024 Sep-Oct, 29(5);596-607
[PubMed:39478710] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Osman S, Hirsch C, Jalal Z, Paudyal V
Collaborative approaches to health education: perspectives of parents and teachers on self-care and managing common health issues in UK primary schools.
BMC Health Serv Res: 2024 Oct 30, 24(1);1315
[PubMed:39478624] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ghalavand H, Nabiolahi A
Exploring online health information quality criteria on social media: a mixed method approach.
BMC Health Serv Res: 2024 Oct 30, 24(1);1311
[PubMed:39478573] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wu T, Ren F, Guo Z, Wang J, Zong Z, Wang L, Jin Y, Chen Z, Ren P
Hierarchical Assembly of Ternary MOF-Derived Sandwich Composites for High-Efficiency Tunable Electromagnetic Wave Absorption.
Small: 2024 Oct 31;e2407599
[PubMed:39478353] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Klughammer J, Abravanel DL, Segerstolpe Å, Blosser TR, Goltsev Y, Cui Y, Goodwin DR, Sinha A, Ashenberg O, Slyper M, Vigneau S, Jané-Valbuena J, Alon S, Caraccio C, Chen J, Cohen O, Cullen N, DelloStritto LK, Dionne D, Files J, Frangieh A, Helvie K, Hughes ME, Inga S, Kanodia A, Lako A, MacKichan C, Mages S, Moriel N, Murray E, Napolitano S, Nguyen K, Nitzan M, Ortiz R, Patel M, Pfaff KL, Porter CBM, Rotem A, Strauss S, Strasser R, Thorner AR, Turner M, Wakiro I, Waldman J, Wu J, Gómez Tejeda Zañudo J, Zhang D, Lin NU, Tolaney SM, Winer EP, Boyden ES, Chen F, Nolan GP, Rodig SJ, Zhuang X, Rozenblatt-Rosen O, Johnson BE, Regev A, Wagle N
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features.
Nat Med: 2024 Oct 30;
[PubMed:39478111] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Airaghi Leccardi MJI, Desbiolles BXE, Haddad AY, Joy BC, Song C, Sarkar D
Light-induced rolling of azobenzene polymer thin films for wrapping subcellular neuronal structures.
Commun Chem: 2024 Oct 30, 7(1);249
[PubMed:39478057] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Straub VJ, Burton JW, Geers M, Lorenz-Spreen P
Public attitudes towards social media field experiments.
Sci Rep: 2024 Oct 30, 14(1);26110
[PubMed:39478029] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Boukhvalov DW, Osipov VY, Baldycheva A, Hogan BT
Comprehensive theoretical study of the effects of facet, oxygen vacancies, and surface strain on iron and cobalt impurities in different surfaces of anatase TiO(2).
Sci Rep: 2024 Oct 30, 14(1);26185
[PubMed:39477990] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Vera E, Vallvé JC, Linares V, Paredes S, Ibarretxe D, Bellés M
Serum Levels of Trace Elements (Magnesium, Iron, Zinc, Selenium, and Strontium) are Differentially Associated with Surrogate Markers of Cardiovascular Disease Risk in Patients with Rheumatoid Arthritis.
Biol Trace Elem Res: 2024 Oct 30;
[PubMed:39477851] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Salama GT, Herman PZ, Millanzi WC
A Cross-Sectional Survey to Measure Attitude, Self-Reported Practice, Levels, Typology, and Determinants of Lifetime Gambling Behaviors Among Undergraduate Students in Higher Training Institutions, Tanzania.
J Gambl Stud: 2024 Oct 30;
[PubMed:39477844] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Xu J, Mankowski M, Vanterpool KB, Strauss AT, Lonze BE, Orandi BJ, Stewart D, Bae S, Ali N, Stern J, Mattoo A, Robalino R, Soomro I, Weldon E, Oermann EK, Aphinyanaphongs Y, Sidoti C, McAdams-DeMarco M, Massie AB, Gentry SE, Segev DL, Levan ML
Trials and Tribulations: Responses of ChatGPT to Patient Questions About Kidney Transplantation.
Transplantation: 2024 Oct 31;
[PubMed:39477825] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Coban M, Algul Durak B, Sebnem Karakan M
Relationship of Dickkopf-1 With Atherosclerosis and Arterial Stiffness in Renal Transplant Recipients.
Transplant Proc: 2024 Oct 29;
[PubMed:39477726] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zou Z, Chen X, Weng X, Guo Y, Guan Y, Zhang L
Rho4 interacts with BbGDI and is essential for the biocontrol potential of Beauveria bassiana by maintaining intracellular redox homeostasis.
Pestic Biochem Physiol: 2024 Nov, 205;106145
[PubMed:39477598] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Gonzales CF, Cowling CL, Kelley DR
The Rolled Towel Method for Hormone Response Assays in Maize.
Cold Spring Harb Protoc: 2024 Oct 30;
[PubMed:39477537] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Downar J, Close E, Young JE, White BP
Assisted dying: balancing safety with access.
BMJ: 2024 Oct 30, 387;q2382
[PubMed:39477364] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Fetene SM, Fentie EA, Shewarega ES, Kidie AA
Socioeconomic inequality in postnatal care utilisation among reproductive age women in sub-Saharan African countries with high maternal mortality: a decomposition analysis.
BMJ Open: 2024 Oct 29, 14(10);e076453
[PubMed:39477269] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ullah Z, Ozturk M
Assessment of anti-cancer evaluation of new metabolites isolated from baked Sarcosphaera crassa: An edible poisonous mushroom.
Steroids: 2024 Oct 28;109523
[PubMed:39477180] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liu L, Han X, Hu J, Chen H, Zhai Y
Jointly considering multi-medium and full-cycle to better reveal distribution and removal of antibiotic resistance genes in long-term constructed wetland.
Sci Total Environ: 2024 Oct 28;177276
[PubMed:39477107] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhao J, Xie X, Chen Z, Wang Q, Zhang H, Shen Y, Ye J, Zhang S, Wu C, Feng K
Electro-stimulated biodegradation of dimethyl disulfide: Insights from biofilm spatial structure and key functional genes.
Environ Pollut: 2024 Oct 28;125216
[PubMed:39477005] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Javidan B, Gharbani P
Synthesis of copper hexaferrite magnetic nanoparticles based on carboxymethyl cellulose modified with polyacrylic acid (CMC/PAA/CuFe(12)O(19)) for loading and release of Levothyroxine.
Int J Biol Macromol: 2024 Oct 28;137040
[PubMed:39476890] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Oliveira JA, Eskandar K, Kar E, de Oliveira FR, Filho ALDS
Understanding AI's Role in Endometriosis Patient Education and Evaluating Its Information and Accuracy: Systematic Review.
JMIR AI: 2024 Oct 30, 3;e64593
[PubMed:39476855] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Matsuda H, Sawada M, Suzuki K, Takahashi H, Ikezono T
Efficacy of 1.5% levofloxacin otic solution in treating acute otitis externa: A post hoc analysis of ENT103-3001, a multicenter randomized double-blind parallel-group placebo-controlled phase III study in otitis media with persistent otorrhea.
Auris Nasus Larynx: 2024 Oct 29, 51(6);1060-1067
[PubMed:39476787] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li XS, Geng JG, Zhu YH, Liu LY, Qiao YQ, Ma YL, Lu L, Song CR, Qin Y, Chen GP, Xu M, Wang YR
CT imaging using variable helical pitch scanning for lower extremity arterial disease: Reduced contrast medium dose, improved image quality and diagnostic accuracy.
Eur J Radiol: 2024 Oct 25, 181;111792
[PubMed:39476770] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Shu Q, Gao H, Li RJ, Chen HY, Na GS
The source and dissemination of ARGs in pristine environments: Elucidating the role of migratory birds in the Arctic.
J Hazard Mater: 2024 Oct 23, 480;136272
[PubMed:39476698] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang R, Cheng H, Bian Z
Global occurrence and environmental behavior of novel brominated flame retardants in soils: Current knowledge and future perspectives.
J Hazard Mater: 2024 Oct 28, 480;136298
[PubMed:39476697] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wu L, Yin J, Wu W, Pang K, Sun H, Yin X
Effect of low-molecular-weight organic acids on the transport of polystyrene nanoplastics in saturated porous media.
J Hazard Mater: 2024 Oct 28, 480;136343
[PubMed:39476696] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fei S, Xie H, Cai P, Xu W, Li H
Investigation of preferential flow and leakage location in landfill: A field tracer test and numerical analysis.
Waste Manag: 2024 Oct 29, 190;600-612
[PubMed:39476647] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Cao X, Feng H, Yu L, Shi L, Yan N
A facile synthesis of N-doped carbon encapsulated multimetallic carbonitride as a robust electrocatalyst for oxygen evolution reaction.
J Colloid Interface Sci: 2024 Oct 22, 679(Pt B);703-709
[PubMed:39476624] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ndongo FA, Noah JYA, Kana R, Ndie J, Nono M, Ndzie P, Tejiokem MC, Biheng EH, Nkoa TA, Coulibaly YA, Fokam J, Ketchaji A, Ngako JN, Penda CI, Ndombo POK, Hawa HM, Msellati P, Faye A, Lallemant M, Bissek ACZ
A community-based peer-facilitated psychological and social support model to improve retention in care among Cameroonian adolescents perinatally infected with human immunodeficiency virus: A randomized controlled trial.
J Epidemiol Popul Health: 2024 Oct 29, 72(6);202792
[PubMed:39476433] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Perry SP, Abaied JL, Wu DJ, Doriscar JE
Racial Socialization in the United States.
Annu Rev Psychol: 2024 Oct 30;
[PubMed:39476411] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yu Y, Dykxhoorn J, Plackett R
The Impact of Different Types of Social Media Use on the Mental Health of UK Adults: Longitudinal Observational Study.
J Med Internet Res: 2024 Oct 30, 26;e56950
[PubMed:39476374] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Barzilay JR, Jackson MA, Tunkel D
Watchful Waiting versus Antibiotics for Acute Otitis Media in Pediatric Patients.
N Engl J Med: 2024 Oct 31, 391(17);1648-1650
[PubMed:39476347] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Panday SK, Chakravorty A, Zhao S, Alexov E
On delivering polar solvation free energy of proteins from energy minimized structures using a regularized super-Gaussian Poisson-Boltzmann model.
J Comput Chem: 2024 Oct 30;
[PubMed:39476329] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sarki YN, Singh HB, Keot AK, Marwein R, Singha DL, Dehury B, Chikkaputtaiah C
Investigating the Role of OsHDT701 and Other Blast-Associated Negative Regulatory Genes in Indica Rice Cultivar Ranjit Using Combined Wet Lab and Computational Approaches.
Mol Biotechnol: 2024 Oct 30;
[PubMed:39476286] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Carrillo-Gonzalez DF, Hernández-Herrera DY, Medina-Montes AF, Otero-Arroyo R
Effect of the addition of IGF-1 during in vitro culture on the embryonic development speed from different crossbreed bovine embryos.
Trop Anim Health Prod: 2024 Oct 30, 56(8);368
[PubMed:39476264] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hussein A, Bataineh M, Khader Y, Al-Batayneh O
Knowledge, and treatment of molar incisor hypomineralisation (MIH) among dentists in Jordan: a cross-sectional questionnaire based study.
Eur Arch Paediatr Dent: 2024 Oct 30;
[PubMed:39476170] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ghali H, Smith LR, Rubalsky K, Abraham J, Jajoo V, Mhaskar R, Cherpelis BS, Albers SE
Examining dermatology residency applicant profiles for the 2023-2024 cycle: a cross-sectional analysis.
Arch Dermatol Res: 2024 Oct 30, 316(10);727
[PubMed:39476016] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Pellizzer EP, Giovanella P, Faria AU, Sette LD
Marine-derived fungus Paramarasmius palmivorus CBMAI 1062 applied to sulphur indigo blue decolorization, degradation and detoxification.
An Acad Bras Cienc: 2024, 96(4);e20230315
[PubMed:39475997] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chang T, Alvarez J, Chappidi S, Crockett S, Sorouri M, Orchard RC, Hancks DC
Metabolic reprogramming tips vaccinia virus infection outcomes by stabilizing interferon-γ induced IRF1.
PLoS Pathog: 2024 Oct 30, 20(10);e1012673
[PubMed:39475961] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ferren MD
Live as if: An Interview With Marguerite Samms.
J Nurs Adm: 2024 Nov 1, 54(11);588-590
[PubMed:39475889] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Gallego MA, Simoy MV, Vezzani D
Citizen complaints in local media as source of mosquito data: the case of Aedes albifasciatus in an intermediate city of temperate Argentina.
An Acad Bras Cienc: 2024, 96(4);e20240477
[PubMed:39475874] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ravaut M, Zhao R, Phung D, Qin VM, Milovanovic D, Pienkowska A, Bojic I, Car J, Joty S
Targeting COVID-19 and Human Resources for Health News Information Extraction: Algorithm Development and Validation.
JMIR AI: 2024 Oct 30, 3;e55059
[PubMed:39475833] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kim SK, Rogers SL, Lu W, Lee BS, Gelfand VI
EB-SUN, a New Microtubule Plus-End Tracking Protein in Drosophila.
Mol Biol Cell: 2024 Oct 30;mbcE24090402
[PubMed:39475714] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Matsuda A, Mofrad MRK
Regulating transport efficiency through the nuclear pore complex: the role of binding affinity with FG-Nups.
Mol Biol Cell: 2024 Oct 30;mbcE24050224
[PubMed:39475712] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hou R, Ye T, Qin Y, Qiu L, Lyu J, Tan F, Yang Y, Zhao S, Liu N, Li F
Strong Affinity between Astatine and Silver: An Available Approach to Anchoring (211)At in Nanocarrier for Locoregional Oncotherapy.
Langmuir: 2024 Oct 30;
[PubMed:39475623] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Scannapieco E, Pan L, Buie E 2nd, Brüggen M
Understanding density fluctuations in supersonic, isothermal turbulence.
Sci Adv: 2024 Nov, 10(44);eado3958
[PubMed:39475602] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Kim N, Jiang P, Tomita R, Sato-Tomita A, Mikherdov AS, Kim BS, Jin M
Encasing Triaryltriazine with a Bulky Chiral Cap: Luminescent Chiral Crystalline Molecular Rotors with Modulation of Solid-State Chiroptical Properties Mediated by Molecular Rotation.
J Am Chem Soc: 2024 Oct 30;
[PubMed:39475563] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Arp HPH, Gredelj A, Glüge J, Scheringer M, Cousins IT
The Global Threat from the Irreversible Accumulation of Trifluoroacetic Acid (TFA).
Environ Sci Technol: 2024 Oct 30;
[PubMed:39475534] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Elhariry M, Malhotra K, Goyal K, Bardus M, Simba And CoMICs, Kempegowda P
A SIMBA CoMICs Initiative to Cocreating and Disseminating Evidence-Based, Peer-Reviewed Short Videos on Social Media: Mixed Methods Prospective Study.
JMIR Med Educ: 2024 Oct 30, 10;e52924
[PubMed:39475500] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bragazzi N, Garbarino S
The Complex Interaction Between Sleep-Related Information, Misinformation, and Sleep Health: A Call for Comprehensive Research on Sleep Infodemiology and Infoveillance.
JMIR Infodemiology: 2024 Oct 24;
[PubMed:39475424] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zubenko AD, Pashanova AV, Mosaleva SP, Chernikova EY, Karnoukhova VA, Fedyanin IV, Egorova BV, Shchukina AA, Fedorov YV, Fedorova OA
Double-Armed 18- and 21-Membered Macrocycles as Potential Chelators for Lead and Bismuth Radiopharmaceuticals.
Inorg Chem: 2024 Oct 30;
[PubMed:39475211] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

McDonald JS, Schmitz JJ, McDonald RJ
Hyaluronidase Injection for Prevention of Moderate or Severe Complications After Contrast Media Extravasation: A Propensity-Score Matched Analysis.
AJR Am J Roentgenol: 2024 Oct 30;
[PubMed:39475197] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kemmler E, Lemfack MC, Goede A, Gallo K, Toguem SMT, Ahmed W, Millberg I, Preissner S, Piechulla B, Preissner R
mVOC 4.0: a database of microbial volatiles.
Nucleic Acids Res: 2024 Oct 30;
[PubMed:39475188] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhu Y, Fu C, Du J, Jin Y, Du S, Zhao F
Prediction of Cervical Cancer Lymph Node Metastasis via a Multimodal Transfer Learning Approach.
Br J Hosp Med (Lond): 2024 Oct 30, 85(10);1-14
[PubMed:39475034] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Peker E, Ünal S, Uludağ SB, Zorlu NSY
Ring-Enhancing Lesions-Differentiation with MRI.
Br J Hosp Med (Lond): 2024 Oct 30, 85(10);1-20
[PubMed:39475033] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Zhang Z, Fu LZ, He P, Yi XY
Neutral mononuclear indium(III) photosensitizers for CO(2) photoreduction.
Dalton Trans: 2024 Oct 30;
[PubMed:39474851] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mattioni G, Kovacs E, Menassa M, Rebei M, Girard N, Mariolo AV
Robotic subxiphoid radical thymectomy for a thymoma.
Multimed Man Cardiothorac Surg: 2024 Oct 30, 2024;
[PubMed:39474845] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hart R, Karnik S, Sickle KV, Mullin M, Naderer O, Tippin T, Dunn J
Peripheral blood mononuclear cells isolation from mouse and rabbit blood to quantify active nucleotide and define brincidofovir dose for smallpox.
Bioanalysis: 2024 Oct 30;1-9
[PubMed:39474814] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Abhari R, Horvát EÁ
"They Only Silence the Truth": COVID-19 retractions and the politicization of science.
Public Underst Sci: 2024 Oct 30;9636625241290142
[PubMed:39474808] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fechney A, Clarke DE
Evaluation of Injectate Distribution of the Middle Mental Nerve Block Within the Mandibular Canal in a Cadaveric Canine Model.
J Vet Dent: 2024 Oct 30;8987564241293188
[PubMed:39474764] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bailleul L, Ceballos L, Doméjean S, Fuentes V
Deep caries and pulp exposures management preferences in permanent teeth: A survey amongst Spanish dentists.
Int Endod J: 2024 Oct 30;
[PubMed:39474713] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Joseph J, Ramesh P, Sayooj K, Unnikrishnan M, Unnikrishnan G
Functionalized Polyvinyl Alcohol-Gelatin Graft for the Treatment of Tympanic Membrane Perforations.
J Biomed Mater Res A: 2024 Oct 30;
[PubMed:39474709] [WorldCat.org: ISSN ESSN ] [DOI] ( a)


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
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</biblio>