ISA

Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

• Microsoft Windows (32 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Microsoft Windows (64 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Mac OSX (Leopard)
  Download and install this file.
• Linux and Unix systems, R source package
  Download this file, save it in a temporary directory, and start R. Install the downloaded package using the install.packages() function: give the full path of the saved file and use the 'repos=NULL' argument of install.packages().

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Innominato PF, Wreglesworth NI, Antonini A, Buchwald ZS
Drug's Journey of a Thousand Papers Begins With a Single Step.
JCO Clin Cancer Inform: 2024 Oct, 8;e2400225
[PubMed:39401398] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Stefancu A, Aizpurua J, Alessandri I, Bald I, Baumberg JJ, Besteiro LV, Christopher P, Correa-Duarte M, de Nijs B, Demetriadou A, Frontiera RR, Fukushima T, Halas NJ, Jain PK, Kim ZH, Kurouski D, Lange H, Li JF, Liz-Marzán LM, Lucas IT, Meixner AJ, Murakoshi K, Nordlander P, Peveler WJ, Quesada-Cabrera R, Ringe E, Schatz GC, Schlücker S, Schultz ZD, Tan EX, Tian ZQ, Wang L, Weckhuysen BM, Xie W, Ling XY, Zhang J, Zhao Z, Zhou RY, Cortés E
Impact of Surface Enhanced Raman Spectroscopy in Catalysis.
ACS Nano: 2024 Oct 14;
[PubMed:39401392] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Barashkin AA, Amadou H, Nesterov EE
Photochemistry with Plane-Polarized Light: Controlling Selectivity of a Photochemical Rearrangement.
Chemistry: 2024 Oct 14;e202403338
[PubMed:39401378] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Amaniampong PN, Mahendran V, Trinh QT, Zhangyue X, Jonnalagadda U, Gould T, Nguyen NT, Kwan J, Choksi T, Liu W, Valange S, Jérôme F
Localized Oxidative Catalytic Reactions Triggered by Cavitation Bubbles Confinement on Copper Oxide Microstructured Particles.
Angew Chem Int Ed Engl: 2024 Oct 14;e202416543
[PubMed:39401298] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Napieczyńska H, Kedziora SM, Haase N, Müller DN, Heuser A, Dechend R, Kräker K
μCT imaging of a multi-organ vascular fingerprint in rats.
PLoS One: 2024, 19(10);e0308601
[PubMed:39401231] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Walsh LC, Regan A, Okabe-Miyamoto K, Lyubomirsky S
Does putting down your smartphone make you happier? the effects of restricting digital media on well-being.
PLoS One: 2024, 19(10);e0306910
[PubMed:39401227] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Baatiema L, Kunfah SMP, Sanuade OA, Allen LN, Abimbola S, de-Graft Aikins A, Koram KA, Kruk ME
To vaccinate or not to vaccinate? Experiences of COVID-19 vaccine uptake among people living with non-communicable diseases in Ghana: A qualitative study.
PLOS Glob Public Health: 2024, 4(10);e0003820
[PubMed:39401213] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Arregui-Almeida D, Coronel M, Analuisa K, Bastidas-Caldes C, Guerrero S, Torres M, Aluisa A, Debut A, Brämer-Escamilla W, Pilaquinga F
Banana fruit (Musa sp.) DNA-magnetite nanoparticles: Synthesis, characterization, and biocompatibility assays on normal and cancerous cells.
PLoS One: 2024, 19(10);e0311927
[PubMed:39401205] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Espinosa L, Salathé M
Use of large language models as a scalable approach to understanding public health discourse.
PLOS Digit Health: 2024 Oct, 3(10);e0000631
[PubMed:39401186] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Loades ME, Higson-Sweeney N, Teague B, Leas J, Payne-Cook C, Slastikova AV, Peel H, Chamberlain G, Ferguson L, Janes K, Rhodes T, Roupa EC, Biddle L
What do they look for and what do they find? A coproduced qualitative study on young people's experiences of searching for mental health information online.
Psychol Psychother: 2024 Oct 14;
[PubMed:39401093] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lee CH, Kim KM, Shin JI, Jeong DM, Byun JH, Jung MH, Kang HL, Kwon KW, Baik SC, Lee WK, Ahn SK, Yim CD, Hur DG, Lee JW, Shin MK
Clinical impact of major pathogenic genotypes of Pseudomonas aeruginosa associated with refractory chronic suppurative otitis media.
Eur J Clin Microbiol Infect Dis: 2024 Oct 14;
[PubMed:39400676] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Klein BR, Levi DJ, Shah AH, Ivan ME, Levi AD
Social media "SoMe" in neuro-oncology: a review of the literature.
J Neurooncol: 2024 Oct 14;
[PubMed:39400660] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gennaro G, Vatteroni G, Bernardi D, Caumo F
Performance of dual-energy subtraction in contrast-enhanced mammography for three different manufacturers: a phantom study.
Eur Radiol Exp: 2024 Oct 14, 8(1);113
[PubMed:39400659] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

López-Marzo A, Mas-Torrent M
Bioreceptors' immobilization by hydrogen bonding interactions and differential pulse voltammetry for completely label-free electrochemical biosensors.
Mikrochim Acta: 2024 Oct 14, 191(11);669
[PubMed:39400624] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hansen M, Hansen IT, Keller KK, Therkildsen P, Hauge EM, Nielsen BD
Serial assessment of ultrasound sensitivity and scores in patients with giant cell arteritis before and 3 and 10 days after treatment.
Rheumatology (Oxford): 2024 Oct 14;
[PubMed:39400596] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Carlqvist J, Nyman U, Brandberg J, Nyström HF, Hellström M
Effects of iodine contrast media on thyroid function - a prospective study.
Eur Thyroid J: 2024 Oct 1;
[PubMed:39400593] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Coly PM, Chatterjee S, Mezine F, Jekmek CE, Devue C, Nipoti T, Mazlan S, Corona ML, Dingli F, Loew D, van Niel G, Loyer X, Boulanger CM
Low fluid shear stress stimulates the uptake of noxious endothelial extracellular vesicles via MCAM and PECAM-1 cell adhesion molecules.
J Extracell Vesicles: 2024 Oct, 13(10);e12414
[PubMed:39400522] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Mocanu V, Madsen KL
Dietary fibre and metabolic health: A clinical primer.
Clin Transl Med: 2024 Oct, 14(10);e70018
[PubMed:39400450] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Antunes T, Bartoli ABDR, Milazzotto MP
Efficient Method for Liposome-Based Gene Transfer in Cattle Embryos.
Reprod Domest Anim: 2024 Oct, 59(10);e14730
[PubMed:39400401] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Mollo L, Petrucciani A, Norici A
Monocultures vs. polyculture of microalgae: unveiling physiological changes to facilitate growth in ammonium rich-medium.
Physiol Plant: 2024 Sep-Oct, 176(5);e14574
[PubMed:39400338] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Romero-Muñiz I, Loukopoulos E, Xiong Y, Zamora F, Platero-Prats AE
Exploring porous structures without crystals: advancements with pair distribution function in metal- and covalent organic frameworks.
Chem Soc Rev: 2024 Oct 14;
[PubMed:39400325] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Abdalla Ahmed S, Elbadawy A, Khalaf LMR, Samy M
Iliac vein obstruction: accuracy of Direct Multidetector Computed Tomographic Venography and duplex ultrasound.
Br J Radiol: 2024 Oct 14;
[PubMed:39400315] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Garstenauer D, Guggenberger P, Zobač O, Jirsa F, Richter KW
Active site engineering of intermetallic nanoparticles by the vapour-solid synthesis: carbon black supported nickel tellurides for hydrogen evolution.
Nanoscale: 2024 Oct 14;
[PubMed:39400230] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Alyas M, Mahesar RA, Shoib S, Khan MB, Ali SA, Ventriglio A
The impact of social media screen-exposure time on suicidal ideation among Pakistani adolescents.
Int J Soc Psychiatry: 2024 Oct 14;207640241285133
[PubMed:39400227] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Veerasamy Subramani RK, Kumaresan T
Sentiment analysis using graph-based Quickprop method for product quality enhancement.
Network: 2024 Oct 14;1-23
[PubMed:39400226] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chen Y, Long C, Yang L
Isolation and Whole-Cell Patch-Clamp Recording of Hippocampal Microglia from Adult Mice.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400194] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chen K, Xia Y, Liu K, Wang T, Zhang C
Alternative Therapy for Acute Exacerbation of Chronic Obstructive Pulmonary Disease: Moving Cupping along Meridians.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400192] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Blotter ML, Stubbs IW, Norby JH, Holmes M, Kearsley B, Given A, Hine K, Shepherd MR, Parrish RR
High-Quality Seizure-Like Activity from Acute Brain Slices Using a Complementary Metal-Oxide-Semiconductor High-Density Microelectrode Array System.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400191] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

McClymont C, Chabowska K, Xie S, Kyaw MT, Yardimci H
Single-Molecule Real-Time Visualization of DNA Unwinding by CMG Helicase.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400190] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Harbour E, van Rheden V, Rieser H, Jensen U, Schwameder H
Custom Smartphone Application to Guide Locomotor-Respiratory Coupling in the Field Using Step-Adaptive Breathing Sounds.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400189] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Liu Y, Zhang M, Luo K, Zou Y, Yang R
Mouse Wound Models and Preparation of Single-Cell Suspensions.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400188] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jung M, Mun JY
Dual-color Correlative Light and Electron Microscopy for the Visualization of Interactions between Mitochondria and Lysosomes.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400187] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zeng Q, Wu Q, Deng L, Hong L, Li R, Chen A
Enhancement of Facial Rejuvenation Through a Combination of 1565 nm Non-Ablative Fractional Laser with 30% Supramolecular Salicylic Acid.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400186] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gärtner H, Schneider L, Cherubini P
A New Workflow for Sampling and Digitizing Increment Cores.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400185] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Suárez-Cuenca JA, Montoya-Ramírez J, Gutiérrez-Buendía JA, Vera-Gómez E, Hernández-Patricio A, Vargas-Cuautle ME, Chavarría-Santana JM, Zaragoza-Galicia SA, Hernández-Barrón VF, Franco-Pérez J, Díaz-Aranda MA, Ruíz-Hernández AS, Pineda-Juárez JA, Escamilla-Tilch M, Gutiérrez-Salinas J, Toledo-Lozano CG, García S, Mondragón-Terán P
Pulse-Wave Velocity, Flow-Mediated Dilation, and Carotid Intima-Media Thickness to Assess Cardiovascular Risk in Population with Metabolic Syndrome.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400184] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Lesage C, Guihard P, De Fourmestraux C, Gauthier O, Weiss P, Guicheux J, Mieczkowska A, Véziers J, Charbonnier B, Boutet MA, Mabilleau G
Comprehensive Characterization of Tissue Mineralization in an Ex Vivo Model.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400183] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Khalil SM, Cappuccio G, Li F, Maletic-Savatic M
Molecular Imaging of Human Brain Organoids Using Mass Spectrometry.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400180] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang J, Feng L, Liu H, Wan Q, Tao L
Comparison of Three Clinical Stereoscopic Methods for Measuring Binocular Visual Function During Amblyopic Treatment in Unilateral Amblyopia.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400178] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Tan S, Zhu X, Zartman JJ, Deng Q
Low-cost Polyethylene Terephthalate Lamination Microfluidics Designs for Multiplexed Zebrafish Imaging.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400176] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Keary KM 3rd, Sojka E, Gonzalez M, Li Z
Dendritic Spine Quantification Using an Automatic Three-Dimensional Neuron Reconstruction Software.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400175] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Koch I, Schellenberg MJ, Bustos F
Measuring Enzymatic Activity of Neurodevelopmental Disorder-Associated Deubiquitylating Enzymes via an In Vitro Ubiquitin Chain Cleavage Assay.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400174] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zhang M, Yu T, Jia J, Zhang Q, Niu H, Liu G
Competing-Risk Nomogram for Predicting Cancer-Specific Survival in Multiple Primary Colorectal Cancer Patients after Surgery.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400173] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Faria JMS, Figueiredo AC, Teixeira DM, Inácio ML
Infection of In Vivo and In Vitro Pines with the Pinewood Nematode Bursaphelenchus xylophilus and Isolation of Induced Volatiles.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400170] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Liu J, Peng Lu P, Jun Miao Y
MLH1 Gene Expression in Peripheral Blood in Colon Cancer Patients and Their Association with Colon Cancer.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400169] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gao Z, Dremova O, Karwot C, Reinhardt C, Kiouptsi K
Visualization of Neutrophil Extracellular Traps in Mesenteric Venules After Mesenteric Ischemia-Reperfusion Injury via Intravital Microscopy.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400168] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Silva L Jr, Barbosa PA
Foreign Accent and Forensic Speaker Identification in Voice Lineups: The Influence of Acoustic Features Based on Prosody.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400166] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Morice A, Panafieu E, De la Seiglière A, Legeai-Mallet L
Less-Invasive Technique for Non-stabilized Mandibular Fracture in Mouse Models.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400165] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Cai Y, Feng Y, Zhou H, Tao Y, Peng Y, Tian Y
Laparoscopic Left Lateral Sectionectomy: Guided by the Ligamentum Teres Hepatis and the Umbilical Fissure Vein.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400163] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bahl R, Venegas Mata C, Neth B, Meinzinger L, Deppe AC, Jahnke H, Blackwell C, Durymanov M, Reineke J
Growing Desmoplastic Three-Dimensional Pancreatic Cancer Spheroids from Co-Culture.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400162] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Pan T, Jaklic DC, Vaid S, Lin G, VanHeyningen D, Dang LT
A Multi-Electrode Array Platform for Modeling Epilepsy Using Human Pluripotent Stem Cell-Derived Brain Assembloids.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400160] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kim BD, Mondal SK, Kenyon E, Chen M, Mallett CL, deCarvalho AC, Medarova Z, Moore A
Nanoparticle Delivery of an Oligonucleotide Payload in a Glioblastoma Multiforme Animal Model.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400152] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Harrell RA 2nd
Wet Beveling of Microinjection Needles Utilizing Constant Air Pressure for Feedback on Needle Opening.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400151] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Lorenzen SR, Brooks JR, Heiman TC, Yang R
Porous Substrate-Based Electroporation with Transepithelial Electrical Impedance Monitoring.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400150] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ito L, Masui M, Galipon J, Arakawa K
Complete genome sequence of polylactic acid degrading Rhodopseudomonas palustris strain R1 isolated from rice field soil.
Microbiol Resour Announc: 2024 Oct 14;e0081424
[PubMed:39400143] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Takahashi H, Warashina T, Takahashi Y, Tanaka M, Suzuki K, Morita T, Arakawa K
Complete genome sequence of Serratia plymuthica SWSY-3.47.
Microbiol Resour Announc: 2024 Oct 14;e0081524
[PubMed:39400136] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Haikal Y, Jennings MR, Nguyen J, Blazeck JJ
Determining the Serum Stability of Human Adenosine Deaminase 1 Enzyme.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400133] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Park J, Lee G, Choi Y, Kim J, Park S, Lee HY, Choi J
Preparation of Zinc Oxide Nanoparticles and the Evaluation of their Antibacterial Effects.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400132] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Sharma K, Sharma M
Green Synthesis of Quinoline-Based Ionic Liquid.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400131] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zhang Y, Tang J, Yue Z, Guo W, Wang W
Tension-Free Weight-Bearing Model of Steroid-Induced Osteonecrosis of Femoral Head in Rats.
J Vis Exp: 2024 Sep 27, (211);
[PubMed:39400128] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Looi JC, Allison S, Bastiampillai T, Maguire PA, Kisely S, Reutens S, Looi RC
Cybersecurity lessons from the Vastaamo psychotherapy data breach for psychiatrists and other mental healthcare providers.
Australas Psychiatry: 2024 Oct 14;10398562241291340
[PubMed:39400039] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Harde M, Mallya R
A Comprehensive Review of Self-Nanoemulsifying Systems in the Delivery of Herbal Drugs.
Pharm Nanotechnol: 2024 Oct 11;
[PubMed:39400026] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Videla CG, Valencia Chicue L, Colomer AL, Villaescusa M, Ajler P, Ciarrocchi NM
Middle meningeal artery embolization in chronic subdural hematoma.
Medicina (B Aires): 2024, 84(5);1016-1021
[PubMed:39399947] [WorldCat.org: ISSN ESSN ] ( p)

Hashemi M, Finklea FB, Hammons H, Tian Y, Young N, Kim E, Halloin C, Triebert W, Zweigerdt R, Mitra AK, Lipke EA
Hydrogel microsphere stem cell encapsulation enhances cardiomyocyte differentiation and functionality in scalable suspension system.
Bioact Mater: 2025 Jan, 43;423-440
[PubMed:39399838] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Martínez-López JC, Santos Rodríguez M, Oliver Cuenca V, Silva Testa G, van Eck E, Zhao EW, Lozano ÁE, Álvarez C, Carretero-González J
Dibenzodioxin-Based Polymers of Intrinsic Microporosity with Enhanced Transport Properties for Lithium Ions in Aqueous Media.
Macromolecules: 2024 Oct 8, 57(19);9442-9456
[PubMed:39399831] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bilgiç Z, Kayaaslan B, Köksal M, Kaya-Kalem A, Eser F, Hasanoğlu İ, Güner R
The Relationship of Carotid and Brachial Artery Wall Thickness Measurement with Cardiovascular Risk Scoring in Individuals Living with HIV.
Infect Dis Clin Microbiol: 2024 Sep, 6(3);164-173
[PubMed:39399750] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hong Q, Xu Y
Evaluating hand hygiene knowledge, attitudes, and practices among healthcare workers in post-pandemic H1N1 influenza control: a cross-sectional study from China.
Front Public Health: 2024, 12;1432445
[PubMed:39399703] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Gertrudix M, Carbonell-Alcocer A, Arcos R, Arribas CM, Codesido-Linares V, Benítez-Aranda N
Disinformation as an obstructionist strategy in climate change mitigation: a review of the scientific literature for a systemic understanding of the phenomenon.
Open Res Eur: 2024, 4;169
[PubMed:39399659] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Nazari Kangavari H, Hajebi A, Peyrovi H, Salehi M, Taghdisi MH, Motevalian A
Vaccine Refusal and Hesitancy among Iranians Participated in the National COVID-19 Vaccine Hesitancy Survey: A Qualitative Study.
Med J Islam Repub Iran: 2024, 38;50
[PubMed:39399623] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Damari B, Amir Esmaili MR, Rafiee N, Hajebi A
Who Are the Stakeholders in Promoting Mental Health?
Med J Islam Repub Iran: 2024, 38;71
[PubMed:39399615] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Gardiner K, Hanneman K, Kozor R
The environmental effects of non-invasive cardiac imaging.
Am Heart J Plus: 2024 Oct, 46;100463
[PubMed:39399577] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Agopyan-Miu AH, Simmons GB, Baltuch GH
MRI-guided focused ultrasound for essential tremor.
Neurosurg Focus Video: 2024 Oct, 11(2);V3
[PubMed:39399525] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bajaj J, Khandelwal N, Jain A, Swamy MN, Yadav YR
Stereotactic radiofrequency lesioning of caudal zona incerta for parkinsonian tremor.
Neurosurg Focus Video: 2024 Oct, 11(2);V5
[PubMed:39399524] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Seas A, Hon K, Chung D, Todd L, Shah BR, Lad SP, Harward S
Four-tract tractography: multiparametric direct targeting of the dentatorubrothalamic tract.
Neurosurg Focus Video: 2024 Oct, 11(2);V2
[PubMed:39399523] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chen JA, White PJ, Cosgrove GR, Rolston JD
Magnetic resonance-guided focused ultrasound thalamotomy for tremor.
Neurosurg Focus Video: 2024 Oct, 11(2);V4
[PubMed:39399522] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Gazouli M, Panagiotopoulos N, Souliotis K
The dangerous defeat of science and its implications for health behaviors: The case of vaccination.
Hippokratia: 2024 Jan-Mar, 28(1);43
[PubMed:39399401] [WorldCat.org: ISSN ESSN ] ( p)

Bhupalam V, Awad N, Hetzel J
Omission of risk undermines the value of content created by nonphysicians: A cross-sectional analysis of chemical peel videos on TikTok.
JAAD Int: 2024 Dec, 17;124-125
[PubMed:39399333] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Spadaro JZ, Simmons BA, Kahana A
Iodine contrast should be avoided in patients with thyroid eye disease.
Front Ophthalmol (Lausanne): 2024, 4;1478805
[PubMed:39399327] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Tafere C, Demsie DG, Tefera BB, Yehualaw A, Feyisa K, Yismaw MB, Yayehrad AT
Vaccine skepticism and vaccine development stages; inoculation from "cowpox" lesion to the current mRNA vaccine of COVID-19: review.
Ther Adv Vaccines Immunother: 2024, 12;25151355241288135
[PubMed:39399302] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Malham GM, Mobbs RJ
Is it still worth writing a research paper in 2024?
J Spine Surg: 2024 Sep 23, 10(3);329-332
[PubMed:39399070] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bowles T, Trentino KM, Lloyd A, Trentino L, Jones G, Murray K, Thompson A, Halpin S, Waterer G
Outcomes in patients receiving continuous monitoring of vital signs on general wards: A systematic review and meta-analysis of randomised controlled trials.
Digit Health: 2024 Jan-Dec, 10;20552076241288826
[PubMed:39398891] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lee S, Choi S, Ahn SE, Park YJ, Hwang JY, Yeo G, Oh J
Food-related media use and eating behavior in different food-related lifestyle groups of Korean adolescents in metropolitan areas.
Nutr Res Pract: 2024 Oct, 18(5);687-700
[PubMed:39398887] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Jang E, Ko E, Sim J, Jeong M, Park S
Mukbang media: correlations with the dietary behavior of children and adolescents in Korea.
Nutr Res Pract: 2024 Oct, 18(5);674-686
[PubMed:39398882] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Zhou J, Li X, Demeke D, Dinh TA, Yang Y, Janowczyk AR, Zee J, Holzman L, Mariani L, Chakrabarty K, Barisoni L, Hodgin JB, Lafata KJ
Characterization of arteriosclerosis based on computer-aided measurements of intra-arterial thickness.
J Med Imaging (Bellingham): 2024 Sep, 11(5);057501
[PubMed:39398866] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Cao Y, Zhang X, Fearon IM, Li J, Chen X, Zheng F, Zhang J, Sun X, Liu X
Identifying Predictors of Smoking Switching Behaviours Among Adult Smokers in the United States: A Machine Learning Approach.
Cureus: 2024 Sep, 16(9);e69183
[PubMed:39398699] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ding L, Ren X, Sun Y, Yu C, Li G, Wang C
Network Analysis of Association Between Problematic Social Network Use and Alexithymia in Freshmen.
Psychol Res Behav Manag: 2024, 17;3503-3514
[PubMed:39398354] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Oh JH, Karadeniz F, Yang J, Lee H, Choi MN, Jeon S, Park G, Kim J, Park K, Kong CS
Antioxidant, anti-inflammatory, anti-adipogenesis activities and proximate composition of Hermetia illucens larvae reared on food waste enriched with different wastes.
J Anim Sci Technol: 2024 Sep, 66(5);1034-1048
[PubMed:39398304] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Kang W, Zhang J, Gao H, Guan M
Invasive fungal otitis media with peripheral facial paralysis.
Med Mycol Case Rep: 2024 Dec, 46;100672
[PubMed:39398287] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Vodovotz Y, Arciero J, Verschure PF, Katz DL
A multiscale inflammatory map: linking individual stress to societal dysfunction.
Front Sci: 2024, 1;
[PubMed:39398282] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Cipriani E, Gemignani A, Menicucci D
Awareness of everyday effects of climate change: The climate change perceptual awareness scale (CCPAS).
Heliyon: 2024 Oct 15, 10(19);e38461
[PubMed:39398075] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lafetá Pinto Santos S, Miyabara R, Ghimouz R, Dobre M, Brateanu A, Campos LA, Baltatu OC
From science to society: Exploring the nexus between obesity research and public awareness in Brazil.
Heliyon: 2024 Oct 15, 10(19);e37968
[PubMed:39398069] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Asule PA, Musafiri C, Nyabuga G, Kiai W, Kiboi M, Nicolay G, Ngetich FK
Awareness and adoption of climate-resilient practices by smallholder farmers in central and upper Eastern Kenya.
Heliyon: 2024 Oct 15, 10(19);e38368
[PubMed:39397985] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kouas S, Djedidi S, Ben Slimene Debez I, Sbissi I, Alyami NM, Hirsch AM
Halotolerant phosphate solubilizing bacteria isolated from arid area in Tunisia improve P status and photosynthetic activity of cultivated barley under P shortage.
Heliyon: 2024 Oct 15, 10(19);e38653
[PubMed:39397981] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bilişli Y, Çakmak F, Zetter SA, Ünal MI
Navigating truth and disinformation: A comparative analysis of generational responses to the 6 February 2023 earthquake in digital media in Türkiye.
Heliyon: 2024 Oct 15, 10(19);e38667
[PubMed:39397969] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bansal S, Wang B
A critical factor in reactive oxygen species (ROS) studies: the need to understand the chemistry of the solvent used: the case of DMSO.
Chem Sci: 2024 Oct 8;
[PubMed:39397818] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang J, Chen G, Sun D, Tang Y, Xing W, Sun H, Feng X
Regulating Co-O covalency to manipulate mechanistic transformation for enhancing activity/durability in acidic water oxidation.
Chem Sci: 2024 Oct 1;
[PubMed:39397814] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Darabseh MZ, Aburub A, Morse CI, Degens H
The association between smoking/vaping habits and self-reported respiratory symptoms.
Multidiscip Respir Med: 2024 Oct 14, 19;
[PubMed:39397788] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Pierick AR, Marshall D, Yu S, Lowery R, Glenn T, Hansen JE, Pickles D, Norris MD, Russell MW, Schumacher KR
Physical activity in the Fontan population: provider recommendations and patient actions.
Cardiol Young: 2024 Oct 14;1-7
[PubMed:39397769] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Velte S
The Social Memory of Sexual Violence: "You Touch One, You Touch Us All".
Violence Against Women: 2024 Oct 14;10778012241289431
[PubMed:39397653] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Joven ZE, Raj P, Barman I
Material-agnostic characterization of spatially offset Raman spectroscopy in turbid media via Monte Carlo simulations.
Analyst: 2024 Oct 14;
[PubMed:39397651] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bai J, Zhang H, Zhang C, Qin H, Zhou P, Xiang M, Lian Y, Deng Y
Regulating Ru-O Bond and Oxygen Vacancies of RuO(2) by Ta Doping for Electrocatalytic Oxygen Evolution in Acid Media.
Inorg Chem: 2024 Oct 14;
[PubMed:39397578] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

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