Difference between revisions of "Notebook"
| Line 1: | Line 1: | ||
| + | == 2016-07-07 == | ||
| + | *dockers: [https://github.com/rocker-org/rocker/wiki/Sharing-files-with-host-machine storing output in host] | ||
| + | *DREAM dockers: setting up minimal python docker | ||
| + | *configuring lab servers to run docker | ||
| + | |||
== 2016-07-06 == | == 2016-07-06 == | ||
| + | *DREAM dockers, weekly challenge call: | ||
| + | ** Tufts: what to dockerize, how to run | ||
| + | ** python code running over night | ||
== 2016-07-05 == | == 2016-07-05 == | ||
Latest revision as of 12:41, 7 July 2017
Contents
2016-07-07
- dockers: storing output in host
- DREAM dockers: setting up minimal python docker
- configuring lab servers to run docker
2016-07-06
- DREAM dockers, weekly challenge call:
- Tufts: what to dockerize, how to run
- python code running over night
2016-07-05
- DREAM dockers
- Read Tufts' write-up, downloaded code
- Gravitating SNPs
- looked at genotypes/phenotypes data
2016-06-28/29
- porting Roger's STOCSY code to octave: ongoing
- servers' room
2016-06-26/27
- Readings:
- PASCAL paper
- Sven's grant
2016-06-23
- dockerization
- Created a hello world Octave container (from Ubuntu)
- Alpine: bash is not available.
- Docker guide
- porting Roger's STOCSY code to octave: ongoing
2016-06-22
- dockerization
- Created a hello world Java container (from Alpine)
- Sven's research proposal: detailed research plan
2016-06-21
- dockerization
- images vs containers: create a docker image which runs as a container
- boot2docker if you work on a mac
- creating your first Dockerfile
- dockerfile
- Alpine running a minimal Linux image (5MB)
- minimal Java image
2016-06-19/20
- Metabomatching: feature Import Metabolite Associations
- Added a parameter to out file: "kegg_known_x_1"
- Fixed associated_snips: the tag can be repeated, the keggid must be unique.
- Read loma into matrix in one go rather than iterating over each line of the file.
2016-06-12/15
Metabolomics: from data to publication
2016-06-07
- Preparing for SIB's "Metabolomics: from data to publication"
- LC-MS raw data
- Multivariate analysis
- In Situ Metabolomics
- R
- intro
- bnlearn R package (journal club)
- Open-ended brainstorming with Rosanna
2016-06-06
- Metabomatching: adding feature Import Metabolite Associations
- done: waiting for code review w/ Rico
- Bayesian Networks: background reading for journal club
2016-06-02
setsid [program]to fork a process
- Metabomatching: adding feature Import Metabolite Associations
- creating functions
- looping through structures
2016-06-01
- p-values vs. Bayes factors with Marco and Daniele
- Q-Q plots with Reyhan
- GIT and matlab
- "From Bench to Market" @ EPFL
