ISA

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An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Dogan S, Aydin T, Koroglu N, Yilmazer Y, Albayrak N, Cetin F, Moshfeghi E, Celik O
Assessing the efficacy of a novel sperm-washing medium enriched with serotonin, L-carnitine, and coenzyme Q10: an observational cohort study.
Asian J Androl: 2024 Jun 11;
[PubMed:38856308] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Valencia AP, Pharaoh G, Brandao AF, Marcinek DJ
High-Resolution Fluorespirometry to Assess Dynamic Changes in Mitochondrial Membrane Potential in Human Immune Cells.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856231] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mañes-García J, Beccari L, Torres M, Ocaña OH
An Efficient Transgenesis Approach for Gene Delivery in the Mouse Embryonic Heart.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856229] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ball K, Pokrovskaya I, Storrie B
Puncture Wound Hemostasis and Preparation of Samples for Montaged Wide-Area Electron Microscopy Analysis.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856226] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Nian L, Li X, Du J, Liu SB
Quantifying the Level of 8-oxo-dG Using ELISA Assay to Evaluate Oxidative DNA Damage in MCF-7 Cells.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856223] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ryan AT, Dahal A, Mir S, Kim M, Lim K
Real-Time In Vitro Migration Assay for Primary Murine CD8+ T Cells.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856221] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Tsurumaki M, Sato A, Saito M, Kanai A
Comprehensive analysis of insertion sequences within rRNA genes of CPR bacteria and biochemical characterization of a homing endonuclease encoded by these sequences.
J Bacteriol: 2024 Jun 10;e0007424
[PubMed:38856219] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Brennan P, Patel N, Aridi T, Zhan M, Angolano C, Ferran C
Extended 78% Hepatectomy in a Mouse Surgical Model.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856217] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Li Q, Wang X, Li D, Liu Y, Liu K, Liang J, Sun J, Jiang Q, Li J, Liu Z, Gong J, Xiang L, Jia Z, Chen Z, Cao M, Jiang Y
Y-90 Radioembolization and PD-1 Inhibitor as Neoadjuvant Treatment in Hepatocellular Carcinoma.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856215] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zhao W, Yang Q, Lai X, Zhang J
Preparation of Retinal Samples for Volume Electron Microscopy.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856213] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hubal A, Pfaff A, Vos S, Upadhyay M, Bonilha V, Subauste CS
A Simplified Method for Isolation and Culture of Retinal Pigment Epithelial Cells from Adult Mice.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856212] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

DeRousse JT, Dockendorff C
Characterizing Modulators of Protease-activated Receptors with a Calcium Mobilization Assay Using a Plate Reader.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856211] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Morandeau L, Ioppolo JA, Alvarez de Eulate E, Mohamed S, Cullen D, Asad AH, Francis RJ, Atkinson J
An Automated Radiosynthesis of [68Ga]Ga-FAPI-46 for Routine Clinical Use.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856210] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang P, Xia B, Chen Z, Xie J, Sun X, Tian Q, Gao CH, Xun W, Zhang N, Zhang R, Shen Q, Xu Z
An Approach to Constructing Multispecies Biofilm Communities from Rhizosphere Soil.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856209] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Moreno O, Luke CE, Clay A, Durham L, Rocco S, Kumar K, Parchment N, Babcock DE, Myers DD, Wakefield TW, Henke P, Obi AT
Rodent Inferior Vena Cava Venoplasty Balloon Model.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856208] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Crabtree A, McEvoy C, Muench P, Ivory RA, Rodriguez J, Omer M, Charles T, Meabon JS
Modeling Highly Repetitive Low-level Blast Exposure in Mice.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856207] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Frisk H, Burström G, Weinzierl J, Westernhagen L, Tranchant F, Edström E, Elmi-Terander A
Pedicle Screw Placement Using an Augmented Reality Head-Mounted Display in a Porcine Model.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856206] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Vishwakarma K, Gupta A, Purwar S, Kaore NM, Tank S, Pundir S
Direct Microbial Identification using An Automated Microbial Identification System to Facilitate the EUCAST RAST Method Without Mass Spectrometry.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856199] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Annamanedi M, Vance JK, Robinson CM
Neonatal Mouse Bone Marrow Isolation and Preparation of Bone Marrow-Derived Macrophages.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856198] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Feile A, Wegner VD, Raasch M, Mosig AS
Immunocompetent Intestine-on-Chip Model for Analyzing Gut Mucosal Immune Responses.
J Vis Exp: 2024 May 24, (207);
[PubMed:38856194] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gross AR, Olson KA, Pool J, Basson A, Clewley D, Dice JL, Milne N
Spinal manipulation and mobilisation in paediatrics - an international evidence-based position statement for physiotherapists.
J Man Manip Ther: 2024 Jun 10;1-23
[PubMed:38855972] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Juneja S, Pandey S
Assessing hydrophobic deep eutectic solvents for intramolecular excimer formation.
Phys Chem Chem Phys: 2024 Jun 10;
[PubMed:38855956] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ji Y, Li H, Li J, Yang G, Zhang W, Shen Y, Xu B, Liu J, Wen J, Song W
Hair Follicle-Targeted Delivery of Azelaic Acid Micro/Nanocrystals Promote the Treatment of Acne Vulgaris.
Int J Nanomedicine: 2024, 19;5173-5191
[PubMed:38855733] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Widodo A, Haris MS, Ansyori A
Construction of a Tumor-Targeting Nanobubble with Multiple Scattering Interfaces and Its Enhancement of Ultrasound Imaging [Letter].
Int J Nanomedicine: 2024, 19;5271-5272
[PubMed:38855728] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Buist G, Debiasi M, Amelink A, de Boer JF
Theoretical and experimental determination of the confocal function of OCT systems for accurate calculation of sample optical properties.
Biomed Opt Express: 2024 May 1, 15(5);2937-2957
[PubMed:38855667] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Abouzed M, Salama B, Gabr A, Elag KA, Soliman M, Elsaadouni N, Elzahab NA
Impact of smart technology use on sleep quality in individuals with autism spectrum disorder: a mixed-methods investigation.
Front Psychiatry: 2024, 15;1411993
[PubMed:38855644] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Dias M, Shaida Z, Haloob N, Hopkins C
Recovery rates and long-term olfactory dysfunction following COVID-19 infection.
World J Otorhinolaryngol Head Neck Surg: 2024 Jun, 10(2);121-128
[PubMed:38855291] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Salmerón-Ríos A, García-Díaz JA, Pan R, Valencia-García R
Fine grain emotion analysis in Spanish using linguistic features and transformers.
PeerJ Comput Sci: 2024, 10;e1992
[PubMed:38855234] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Qureshi SM, Saeed A, Almotiri SH, Ahmad F, Al Ghamdi MA
Deepfake forensics: a survey of digital forensic methods for multimodal deepfake identification on social media.
PeerJ Comput Sci: 2024, 10;e2037
[PubMed:38855214] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Guo K, Xie H
Deep learning in finance assessing twitter sentiment impact and prediction on stocks.
PeerJ Comput Sci: 2024, 10;e2018
[PubMed:38855200] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Jetubhai KB
"Dressed like boys, hair trimmed, a nalla kutti otherwise": construction of queer suicide in Indian online news media.
Front Sociol: 2024, 9;1370517
[PubMed:38855007] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yang Y, Liu S, Lei P, Huang Z, Liu L, Tan Y
Assessing usability of intelligent guidance chatbots in Chinese hospitals: Cross-sectional study.
Digit Health: 2024 Jan-Dec, 10;20552076241260504
[PubMed:38854920] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Apraku EA, Abubakari SW, Tetteh RJ, Afari-Asiedu S, Harrison ES, Agbokey F, Nyame S, Twumasi MF, Adeapena W, Zandoh C, Abokyi LN, Febir LG, Asante KP
Impact of the COVID-19 pandemic on handwashing practices among community members in the middle belt of Ghana: evidence from a cross-sectional study.
Pan Afr Med J: 2024, 47;122
[PubMed:38854859] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Whembolua GL, Tshiswaka DI
Decolonizing a Wretched Healthcare System: The African Public Health Practitioner Case.
Ethn Dis: 2024 Jan, 34(1);49-52
[PubMed:38854788] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yagi Y, Doke A, Iwame S, Arakawa Y, Yamagishi Y
Epidemiological Study on Case Definition of Methicillin-Resistant Staphylococcus aureus Enteritis.
Infect Drug Resist: 2024, 17;2237-2247
[PubMed:38854779] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Sherren K, Chen Y, Mohammadi M, Zhao Q, Gone KP, Rahman HT, Smit M
Social media and social impact assessment: Evolving methods in a shifting context.
Curr Sociol: 2024 Jul, 72(4);629-648
[PubMed:38854777] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Pham HH, Le AH, Nguyen TC, Ma MPQ, Akin N, Pham TD, Nguyen MHN, Le HL, Huynh BG, Smitz J, Ho TM, Vuong LN
Effect of single versus grouped culture of human cumulus-oocyte complexes in PCOS women treated with biphasic in vitro maturation: A sibling oocyte pilot study.
Reprod Med Biol: 2024 Jan-Dec, 23(1);e12587
[PubMed:38854775] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Park C, Sathasivam R, Yeo HJ, Park YJ, Kim JK, Shin SY, Park SU
Comparative Analysis of Primary and Secondary Metabolites in Different In Vitro Tissues of Narcissus tazetta var. chinensis.
ACS Omega: 2024 Jun 4, 9(22);23761-23771
[PubMed:38854557] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Jang SG, Ock M, Kim S
Qualitative Comparison of Perceptions Regarding Patient Engagement for Patient Safety by Physicians, Nurses, and Patients.
Patient Prefer Adherence: 2024, 18;1065-1075
[PubMed:38854478] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Warren KR, Parker EA, Ganjavi M, Watkins-Lewis K, Clark S, Randolph Cunningham S, Hancock Y
Peer-Led Focus Groups Identify Barriers to Healthy Lifestyle in African American Adolescents from Baltimore City.
Ethn Dis: 2023 Sep, 33(4);163-169
[PubMed:38854412] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Haward R, Chacko J, Konjeti S, Metri GR, Binoy BK, Haward R, Raju S
Debunking the Myth: Eggs and Heart Disease.
Cureus: 2024 May, 16(5);e59952
[PubMed:38854339] [WorldCat.org: ISSN ESSN ] [DOI] ( )

B N, Omar BJ
Enhancing Staphyloxanthin Synthesis in Staphylococcus aureus Using Innovative Agar Media Formulations.
Cureus: 2024 May, 16(5);e59892
[PubMed:38854293] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Nakamura G, Ozaki M, Yasuda Y, Yoshida T, Inoue T
Radiocontrast Medium-Induced Kounis Syndrome in a Dialysis Patient: A Case Report.
Cureus: 2024 May, 16(5);e60014
[PubMed:38854232] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hussein SM, Alhwaiti SS, Almalki G, Al Asadah GA, Mahdi R, Sami C, Dawood E
The Epidemiology of Nomophobia and Insomnia Among Medical Students in Jeddah, Saudi Arabia.
Cureus: 2024 May, 16(5);e59927
[PubMed:38854194] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Sawant NS, More SR, Singh SD, Agrawal AS, Chauhan A
Eating behaviours, social media usage, and its association: A cross-sectional study in Indian medical undergraduates.
Ind Psychiatry J: 2024 Jan-Jun, 33(1);127-132
[PubMed:38853814] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Shoib S, Saeed F, Philip S, Chandradasa M, Das S, de Filippis R, Yousaf Z, Ojeahere M, Gad HK, Yadivel R, Legris Z, Jatchavala C, Paul R, Gupta AK, Handuleh JIM, Gürcan A, da Costa MP, Dannatt L, Ahmad AR, Jaguga F, Saleem SM, Sawitri B, Arif N, Islam MS, Haque MA, Őri D, Chumakov E, Swed S, Roza TH, Islam SMS
Parity of esteem: A global COVID-19 vaccination approach for people with mental illnesses, based on facts from 34 countries; recommendations and solutions.
Ind Psychiatry J: 2024 Jan-Jun, 33(1);30-40
[PubMed:38853796] [WorldCat.org: ISSN ESSN ] [DOI] ( o)


Un mese nei tweet
per conoscere, per riflettere, per costruire reti.
Recenti Prog Med: 2024 Jun, 115(6);262-263
[PubMed:38853726] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Zheng T, Fei W, Hou D, Li P, Wu N, Wang M, Feng Y, Luo H, Luo N, Wei W
Characteristic study of biological CaCO(3)-supported nanoscale zero-valent iron: stability and migration performance.
Environ Technol: 2024 Jun 10;1-14
[PubMed:38853645] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Waidyaratne G, Daboul J, Liyanarachchi S, Chakraborty S
The evaluation and analysis of irritable bowel syndrome-related short videos on social media (TikTok).
Aliment Pharmacol Ther: 2024 Jun 10;
[PubMed:38853598] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kaur-Gill S
"They [Doctors] Don't Really Know What We're Actually Experiencing": Undoing Racializing Frames of Heart Health in Singapore by Centering Listening as Method.
Health Commun: 2024 Jun 9;1-11
[PubMed:38853488] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Roesler A, Butten K, Taylor P, Morrison M, Varnfield M, Holmes-Truscott E
The experiences of individuals who have had gestational diabetes: A qualitative exploration.
Diabet Med: 2024 Jun 9;e15374
[PubMed:38853396] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lee J, Tosti A
Does increased interest in oral minoxidil after media attention apply to non-English-speaking patients?
Int J Dermatol: 2024 Jun 9;
[PubMed:38853395] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jones A, Duong CC
Exploring predictors of help-seeking behaviors among women with postpartum depression: A social media recruited sample.
Public Health Nurs: 2024 Jun 9;
[PubMed:38853282] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chen YC, Chuang EY, Tu YK, Hsu CL, Cheng NC
Human platelet lysate-cultured adipose-derived stem cell sheets promote angiogenesis and accelerate wound healing via CCL5 modulation.
Stem Cell Res Ther: 2024 Jun 9, 15(1);163
[PubMed:38853252] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Sohi GK, Farooqui N, Mohan A, Rajagopalan KS, Xing L, Zhu XY, Jordan K, Krier JD, Saadiq IM, Tang H, Hickson LJ, Eirin A, Lerman LO, Herrmann SM
The impact of hypoxia preconditioning on mesenchymal stem cells performance in hypertensive kidney disease.
Stem Cell Res Ther: 2024 Jun 9, 15(1);162
[PubMed:38853239] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wagner F, Almeida GG, Willems EP, Weber J, Geiss J, Hundsberger T, Mordasini P, Wildermuth S, Leschka S, Waelti S, Dietrich TJ, Fischer TS
Temporal evolution of primary angiitis of the central nervous system (PACNS) on MRI following immunosuppressant treatment.
Insights Imaging: 2024 Jun 9, 15(1);140
[PubMed:38853223] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Brady K, Lee A, Bassler J, Young Pierce J, Daniel CL
Human papillomavirus vaccine beliefs and intentions Post-COVID-19 vaccine release among mothers in Alabama.
Vaccine: 2024 Jun 8;
[PubMed:38853035] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang X, Zheng Y, Ning P, Lynch I, Guo Z, Zhang P, Wu L
Synergetic effect of green synthesized NZVI@Chitin-modified ZSM-5 for efficient oxidative degradation of tetracycline.
Environ Res: 2024 Jun 7;119360
[PubMed:38852830] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lee J, Goodwin DJ, Dhenge RM, Nassar J, Zeitler JA
Calorimetric investigation on heat release during the disintegration process of pharmaceutical tablets.
Int J Pharm: 2024 Jun 7;124315
[PubMed:38852747] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Busheme C, Yerke Hansen P, Desai A, Baran JV, Fomunung C, Jackson GR, Sabesan VJ
Social Media Use and Patient Ratings in Shoulder and Elbow Surgeons: How Many 'Likes' for Five Stars?
J Shoulder Elbow Surg: 2024 Jun 7;
[PubMed:38852705] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ranganathan S, Benjamin D, Haslam A, Prasad V
Social Media Engagement of Supportive Care Publications in Oncology.
J Cancer Policy: 2024 Jun 7;100491
[PubMed:38852671] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Carné AV, Pinedo AZ, Farrarons SS, Andorrà EC
Surgical treatment of the Median Arcuate Ligament Syndrome (MALS) using robotic platform.
Cir Esp (Engl Ed): 2024 Jun 7;
[PubMed:38852617] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sandon A, Saucet M, Delaune M, Millot I
Ten years promoting health of young people in Bourgogne-Franche-Comté: A review of the Pass'Santé Jeunes program.
J Epidemiol Popul Health: 2024 Jun 7, 72(3);202751
[PubMed:38852463] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Pedrotti BG, Bandeira DR, Frizzo GB
Context of digital media use in early childhood: Factors associated with cognitive development up to 36 months of age.
Infant Behav Dev: 2024 Jun 8, 76;101963
[PubMed:38852374] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Pronkin PG, Sorokina ON, Tatikolov AS
Spectral-fluorescent study of substituted trimethine cyanine dyes in solutions and in complexes with DNA. Effects of aggregation, moderate heating, and decreasing pH.
Spectrochim Acta A Mol Biomol Spectrosc: 2024 Jun 6, 320;124611
[PubMed:38852304] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Pellegrino Vidal RB, Castañeda FN, Garrido ME, Padró JM
Aqueous size exclusion chromatography applied to polymer analysis: experimental conditions and molecular weight calibration curves.
J Chromatogr A: 2024 Jun 1, 1729;465042
[PubMed:38852271] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Qin L, Liu G, Huang J, Zeng Z, Zeng Y, Qing T, Zhang P, Feng B
Comparison of the toxic effects of polystyrene and sulfonated polystyrene on wheat under cadmium stress.
J Hazard Mater: 2024 Jun 5, 474;134844
[PubMed:38852252] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wells H, Bough G, Stedman F, Ekerin AR, Hall NJ
Investigations, management and outcome of neonates presenting with distal intestinal obstruction: challenging the need for contrast enemas.
Pediatr Surg Int: 2024 Jun 9, 40(1);154
[PubMed:38852109] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Frøyland LR, Tokle R, Burdzovic Andreas J, Brunborg GS
Sexting and Mental Health in Adolescence: A Longitudinal Study.
J Adolesc Health: 2024 Jun 7;
[PubMed:38852090] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

O'Daffer A, Bintliff AV, Bloss CS
Getting Schooled on Social Media and Adolescent Mental Health.
J Adolesc Health: 2024 Jun 7;
[PubMed:38852088] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Olsson SE, Friedlich N, Bolds A, Hodge A, Jamali T, Lagomichos M
Exploring Menstrual Education via TikTok: A Descriptive Content Analysis.
J Adolesc Health: 2024 Jun 9;
[PubMed:38852086] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nakayama M, Matsuo H, Sato T, Okabe M, Aizawa Y
Is ischemic stimulus involved for J wave augmentation during coronary angiography and intracoronary administration of normal saline?
Pacing Clin Electrophysiol: 2024 Jun 9;
[PubMed:38852066] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

El-Nagar D, Salem SH, El-Zamik FI, El-Basit HMIA, Galal YGM, Soliman SM, Aziz HAA, Rizk MA, El-Sayed ER
Bioprospecting endophytic fungi for bioactive metabolites with seed germination promoting potentials.
BMC Microbiol: 2024 Jun 8, 24(1);200
[PubMed:38851702] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Alzahrani AYA, Aboelez MO, Kamel MS, Selim HMRM, Alsaggaf AT, Hamd MAE, El-Remaily MAEAAA
Design, spectroscopic characterizations, and biological investigation of oxospiro[chromine-4,3-indolene]-based compounds as promising antiproliferative EGFR inhibitors and antimicrobial agents.
Mol Divers: 2024 Jun 9;
[PubMed:38851658] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Shahi PB, Manandhar S, Angove MJ, Paudel SR
Performance evaluation of species varied fixed bed biofilm reactor for wastewater treatment of Dhobi Khola outfall, Setopul, Kathmandu, Nepal.
Sci Total Environ: 2024 Jun 6, 942;173752
[PubMed:38851334] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Choudhury TR, Riad S, Uddin FJ, Maksud MA, Alam MA, Chowdhury AMS, Mubin AN, Islam ARMT, Malafaia G
Microplastics in multi-environmental compartments: Research advances, media, and global management scenarios.
J Contam Hydrol: 2024 Jun 3, 265;104379
[PubMed:38851130] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ajab H, Jafry AT, Sajid H, Addicoat MA, Ayub K, Haq MZU
An electrochemical sensing potential of cobalt oxide nanoparticles towards citric acid integrated with computational approach in food and biological media.
Food Chem: 2024 May 27, 455;139869
[PubMed:38850977] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Borges R, Brondi M, Elias AM, Farinas CS, Ribeiro C
Mechanochemical recycling of cellulose multilayer carton packages to produce micro and nanocellulose from the perspective of techno-economic and environmental analysis.
J Environ Manage: 2024 Jun 7, 363;121254
[PubMed:38850909] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Matenda RT, Rip D, Fernández Pierna JA, Baeten V, Williams PJ
Differentiation of Listeria monocytogenes serotypes using near infrared hyperspectral imaging.
Spectrochim Acta A Mol Biomol Spectrosc: 2024 May 31, 320;124579
[PubMed:38850824] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang S, Song G, Yang Z, Kang K, Liu X
A label-free fluorescence aptamer sensor for point-of-care serotonin detection.
Talanta: 2024 Jun 4, 277;126363
[PubMed:38850806] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li T, Yang ZC, Wang ZQ, Peng ZZ, Mao GJ, Jiang YQ, Li CY
A Tumor-Targeting Dual-Modal imaging probe for nitroreductase in vivo.
Bioorg Chem: 2024 Jun 4, 149;107531
[PubMed:38850779] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ganson KT, Testa A, Rodgers RF, Nagata JM
Use of photo filters is associated with muscle dysmorphia symptomatology among adolescents and young adults.
Body Image: 2024 Jun 7, 50;101750
[PubMed:38850715] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wood-Barcalow NL, Alleva JM, Tylka TL
Revisiting positive body image to demonstrate how body neutrality is not new.
Body Image: 2024 Jun 7, 50;101741
[PubMed:38850714] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ladwig G, Tanck JA, Quittkat HL, Vocks S
Risks and benefits of social media trends: The influence of "fitspiration", "body positivity", and text-based "body neutrality" on body dissatisfaction and affect in women with and without eating disorders.
Body Image: 2024 Jun 7, 50;101749
[PubMed:38850713] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

DeMora SL, Granados Samayoa JA, Albarracín D
Social media use and vaccination among Democrats and Republicans: Informational and normative influences.
Soc Sci Med: 2024 Jun 1, 352;117031
[PubMed:38850678] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Pérez-Rubio P, Vendrell-Flotats M, Romero EL, Enemark-Rasmussen K, Cervera L, Gòdia F, Lavado-García J
Internalization of PEI-based complexes in transient transfection of HEK293 cells is triggered by coalescence of membrane heparan sulfate proteoglycans like Glypican-4.
Biomed Pharmacother: 2024 Jun 7, 176;116893
[PubMed:38850653] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Dragoș S, Hughson TA
Furthering racial liberalism in UK higher education: The populist construction of the 'free speech crisis'.
Br J Sociol: 2024 Jun 8;
[PubMed:38850550] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang L, Wang C, Xu L, Wang M
Regulation of nitrogen utilization and mycotoxin biosynthesis by the GATA transcription factor AaAreA in Alternaria alternata.
World J Microbiol Biotechnol: 2024 Jun 8, 40(8);236
[PubMed:38850454] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Xu X, Zhang C
How does stock market react to environmental penalty announcements?
Environ Sci Pollut Res Int: 2024 Jun 8;
[PubMed:38850392] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Myeoung BJ, Park JH, Lee BJ, Jeong HJ, Kim A, So MW, Lee SG
Social media has become a mainstream source of medical information for patients with rheumatic diseases: a cross-sectional survey of patients.
Rheumatol Int: 2024 Jun 8;
[PubMed:38850324] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Karimzadeh Barenji E, Beglari S, Tahghighi A, Azerang P, Rohani M
Evaluation of Anti-Bacterial and Anti-Biofilm Activity of Native Probiotic Strains of Lactobacillus Extracts.
Iran Biomed J: 2023 Dec 17, 28(2&3);102-12
[PubMed:38850020] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mautner D, Valanju R, Al Hadaya I, Barani M, Cross A, McMahon E, Ren B, Rose D, Sharda A, Sinnett A, Yan F, Wardak S
Experiences from youth advisors in chronic disease prevention research.
Res Involv Engagem: 2024 Jun 7, 10(1);56
[PubMed:38849959] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kim D, Lee S, Kim H, Shin Y
From temperament to YouTube: exploring the link between childhood temperament, YouTube usage patterns, and emotional/behavioral problems among children.
BMC Public Health: 2024 Jun 7, 24(1);1547
[PubMed:38849777] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yue RZ, Wang J, Lin F, Li CJ, Su BH, Zeng R
CUX1 attenuates the apoptosis of renal tubular epithelial cells induced by contrast media through activating the PI3K/AKT signaling pathway.
BMC Nephrol: 2024 Jun 7, 25(1);192
[PubMed:38849771] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bruns M, Walch T, Wagner C, Bergeron R, Kim S
Examining the role of knowledge and trust on vaccine confidence in North Dakota among university students, faculty, and staff.
BMC Public Health: 2024 Jun 7, 24(1);1539
[PubMed:38849753] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yan X, Li Y, Qin W, Liao J, Fan J, Xie Y, Wang Z, Li S, Liao W
Radiomics model based on contrast-enhanced computed tomography imaging for early recurrence monitoring after radical resection of AFP-negative hepatocellular carcinoma.
BMC Cancer: 2024 Jun 7, 24(1);700
[PubMed:38849749] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Harlow J, Dallner M, Nasheri N
Optimization of the replication of hepatitis E Virus genotype 3 in Vitro.
J Appl Microbiol: 2024 Jun 7;
[PubMed:38849307] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lau SSS, Fong JWL, van Rijsbergen N, McGuire L, Ho CCY, Cheng MCH, Tse D
Emotional responses and psychological health among young people amid climate change, Fukushima's radioactive water release, and wars in Ukraine and the Middle East, and the mediating roles of media exposure and nature connectedness: a cross-national analysis.
Lancet Planet Health: 2024 Jun, 8(6);e365-e377
[PubMed:38849179] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ceniza MA, Madraga KF, Magnanao MN, Labrador MMR, Rivera M, Bacharo KBB
Scuba diving-related fatalities in the Philippines from 2008 to 2022 as reported in online news media.
J Sci Med Sport: 2024 Jun, 27(6);368-372
[PubMed:38849159] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Pereira ML, Caramelli P, Sá VM, Rocha PHM, Oliveira JPG, Amorim RP, Silva EVD, Delboni VS, Barbosa MT, Miranda LFJR, de Souza LC
Memory complaint in a middle-income country: a four-year longitudinal study in a cohort with low-education.
Arq Neuropsiquiatr: 2024 May, 82(5);1-9
[PubMed:38849124] [WorldCat.org: ISSN ESSN ] [DOI] ( o) 

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Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
[PubMed:15606968] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
[PubMed:12689096] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
[PubMed:12134151] [WorldCat.org: ISSN ESSN ] [DOI] ( o)


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

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