ISA

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An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Pham LN, Perdomo Y, Slocik JM, Rao R, Walsh TR, Knecht MR
Sustainable, aqueous exfoliation of MoS(2)via bio-inspired avenues.
J Mater Chem B: 2024 Aug 7;
[PubMed:39110475] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Graham AL, Cha S, Jacobs MA, Amato MS, Funsten AL, Edwards G, Papandonatos GD
A Vaping Cessation Text Message Program for Adolescent E-Cigarette Users: A Randomized Clinical Trial.
JAMA: 2024 Aug 7;
[PubMed:39110436] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Pannek J, Mahler J, Kurmann C, Widmer A, Krebs J, Wöllner J
An in-vitro model for bacteria-related catheter encrustations.
World J Urol: 2024 Aug 7, 42(1);469
[PubMed:39110241] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Miled MB, Fradin M, Benbakoura N, Mazière L, Rousseau J, Bouzid A, Carles P, Iwamoto Y, Masson O, Habrioux A, Bernard S
Encapsulating Nickel-Iron Alloy Nanoparticles in a Polysilazane-Derived Microporous Si-C-O-N-Based Support to Stimulate Superior OER Activity.
ChemSusChem: 2024 Jun 22;e202400561
[PubMed:39110122] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Armato J, DeFronzo RA, Abdul-Ghani M, Ruby R
Pre-Prediabetes: Insulin Resistance is Associated with Cardiometabolic Risk in Non-obese Patients (STOP DIABETES).
J Clin Endocrinol Metab: 2024 Aug 7;
[PubMed:39109850] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rossi B, Tommasini M, Ossi PM, Paolantoni M
Pre-resonance effects in deep UV Raman spectra of normal and deuterated water.
Phys Chem Chem Phys: 2024 Aug 7;
[PubMed:39109787] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jorge OS, Remiro MODS, Lotto M, Cruvinel T
Exploring the factors driving higher interactions in false amber necklace posts on Facebook.
Braz Oral Res: 2024, 38;e067
[PubMed:39109764] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Carvalho Neto APM, Lisboa APS, Lemos Neto DA, Tavares MMA, Amaral MA, Moura MFS, Anjos TM, Omena ACS, Messias HBG, Omena BC, Ferreira Júnior GC, Cavalcanti MGS, Arinísio LS, Silva AC, Santos Júnior CJ, Oliveira ECT, Sales MLH, Ribeiro MC, Rocha TJM
Knowledge, behavior and practices of the population during the pandemic against the transmission of SARS-CoV-2 in the state of Alagoas, Brazil.
Braz J Biol: 2024, 84;e283307
[PubMed:39109726] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Forbes-Amrhein MM
Editorial Comment: With or Without Contrast Media? Navigating the Challenge of Imaging Pregnant and Lactating Patients.
AJR Am J Roentgenol: 2024 Aug 7;
[PubMed:39109680] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li W, Taboas JM, Almarza AJ
Chondrogenic potential of superficial versus cartilage layer cells of the temporomandibular joint condyle in photopolymerizable gelatin-based hydrogels.
Proc Inst Mech Eng H: 2024 Aug 7;9544119241267021
[PubMed:39109566] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Igai H, Ida A, Numajiri K, Nii K, Kamiyoshihara M
A robotic left S6 and S1/2c segmentectomy using the lung-inverted approach.
Multimed Man Cardiothorac Surg: 2024 Aug 7, 2024;
[PubMed:39109549] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Shi J, Gu H, Fan W, Xia J, Gu H
Comparison of the Application Value of Transthoracic Echocardiography in Diagnosing Patent Foramen Ovale Under Different States of Stimulation: A Retrospective Study.
Clin Cardiol: 2024 Aug, 47(8);e24319
[PubMed:39109504] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Gómez-López DL, Velasco-Acosta DA, Chávez-Rodríguez A, Schneider A, Rocha JF, Dubeibe-Marín DF
Chemical gasification: An alternative approach to in vitro maturation of bovine oocytes.
Reprod Domest Anim: 2024 Aug, 59(8);e14701
[PubMed:39109447] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Kwon T, Jeong H, Kim M, Jung S, Ro I
Catalytic Approaches to Tackle Mixed Plastic Waste Challenges: A Review.
Langmuir: 2024 Aug 7;
[PubMed:39109437] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Soliman MG, Martinez-Serra A, Dobricic M, Trinh DN, Cheeseman J, Spencer DIR, Monopoli MP
Protocols for isolation and characterization of nanoparticle biomolecular corona complexes.
Front Toxicol: 2024, 6;1393330
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Maisner RS, Kapadia K, Berlin R, Lee ES
Is #Gender Affirmation Surgery Trending? An Analysis of Plastic Surgery Residency Social Media Content.
Transgend Health: 2024 Jun, 9(3);254-263
[PubMed:39109256] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Allen BJ, Stratman ZE, Kerr BR, Zhao Q, Moreno MA
Problematic Internet Use and Technology Interactions Among Transgender Adolescents.
Transgend Health: 2024 Jun, 9(3);264-268
[PubMed:39109254] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Sung J, Hong JY, Kim J, Jung J, Choi S, Kang JY, Han MA
Mukbang and Cookbang watching and dietary behavior in Korean adolescents.
Nutr Res Pract: 2024 Aug, 18(4);523-533
[PubMed:39109196] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Yang M, Yang Y, Li S
Understanding invisible pain in the older adult: a content analysis of social media's representation of herpes zoster vaccine.
Front Public Health: 2024, 12;1420349
[PubMed:39109157] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Almutairi MA, AlYahia O
General Public Awareness Toward Vitamin D Deficiency in Qassim, Saudi Arabia.
Cureus: 2024 Jul, 16(7);e63967
[PubMed:39109144] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Wu C, Dawson A
The Trump Effect? Right-Wing Populism and Distrust in Voting by Mail in Canada.
Public Opin Q: 2024, 88(SI);781-813
[PubMed:39109093] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Mont'Alverne C, Arguedas AR, Banerjee S, Toff B, Fletcher R, Nielsen RK
The Electoral Misinformation Nexus: How News Consumption, Platform Use, and Trust in News Influence Belief in Electoral Misinformation.
Public Opin Q: 2024, 88(SI);681-707
[PubMed:39109090] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Vliegenthart R, Van Ham C, Kruikemeier S, Jacobs K
A Matter of Misunderstanding? Explaining (Mis)Perceptions of Electoral Integrity across 25 Different Nations.
Public Opin Q: 2024, 88(SI);495-515
[PubMed:39109087] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Nguyen NT, Dai VV, Mechler A, Van Meervelt L, Hoa NT, Vo QV
Synthesis and computational evaluation of the antioxidant activity of pyrrolo[2,3-b]quinoxaline derivatives.
RSC Adv: 2024 Aug 5, 14(34);24438-24446
[PubMed:39108963] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Pérez LO, Dómina TA, Fernández GA, Silbestri GF, Testero SA
Unlocking the potential of water-soluble gold(i)-NHC complexes: unveiling the role of carboxylic acid in cycloisomerization of alkynyl amino acid derivatives.
RSC Adv: 2024 Aug 5, 14(34);24643-24651
[PubMed:39108960] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Wu W, Zhan H, Wang Y, Ma X, Hou J, Ren L, Liu J, Wang L, Zhang Y
Improving image quality and in-stent restenosis diagnosis with high-resolution "double-low" coronary CT angiography in patients after percutaneous coronary intervention.
Front Cardiovasc Med: 2024, 11;1330824
[PubMed:39108672] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Marshall A, Kalus A, Schachtel A
Rogue Hairs: A Mixed-Method Characterization of a Previously Unreported Entity.
Skin Appendage Disord: 2024 Aug, 10(4);301-306
[PubMed:39108552] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Long Y, Peng Y, Huang Z, Zhu M, Wan C
Enhancing the cytological features and diagnostic significance of cerebrospinal fluid in bacterial meningitis.
Cytojournal: 2024, 21;24
[PubMed:39108465] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Qin C, Li Y, Wang T, Zhao J, Tong L, Yang J, Liu Y
Too much social media? Unveiling the effects of determinants in social media fatigue.
Front Psychol: 2024, 15;1277846
[PubMed:39108425] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Çat O, Chang J, Hlatky R, Li H, Nielson DL
Behavioral nudges in social media ads show limited ability to encourage COVID-19 vaccination across countries.
PNAS Nexus: 2024 Aug, 3(8);pgae189
[PubMed:39108305] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Machado CB, Oosterbaan M
Theopolitical police: BOPE, Christianity and popular culture in Rio de Janeiro.
Cult Relig: 2023, 23(3);326-351
[PubMed:39108277] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Larkin A, MacDonald M, Jackson D, Kile ML, Hystad P
Identifying children's environmental health risks, needs, misconceptions, and opportunities for research translation using social media.
Explor Digit Health Technol: 2024, 2(2);59-66
[PubMed:39108274] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Kwaslema DR, Michael PS
Meta-analysis of nanomaterials and plants interaction under salinity stress.
Physiol Plant: 2024 Jul-Aug, 176(4);e14445
[PubMed:39108184] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Meredith K, Pollard D, Mason V, Ali A
The bacterial displacement test: an in vitro microbiological test for the evaluation of intermittent catheters and urinary tract infection.
J Appl Microbiol: 2024 Aug 6;
[PubMed:39108089] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jain R, Khanna R, Verma A, Mishra SP, Meena RN, Khanna S, Khanna S
Evaluation of axillary lymph nodes in breast cancer patients with clinically negative axilla using contrast enhanced ultrasonography.
World J Surg Oncol: 2024 Aug 7, 22(1);211
[PubMed:39107826] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Roets E, Schuster K, Bickley S, Wartenberg M, Gonzato O, Fernandez N, Kasper B, Pilgermann K, Wilson R, Steeghs N, van der Graaf WTA, van Oortmerssen G, Husson O
Setting the international research agenda for sarcomas with patients and carers: results of phase II of the Sarcoma Patient Advocacy Global Network (SPAGN) priority setting partnership.
BMC Cancer: 2024 Aug 6, 24(1);962
[PubMed:39107697] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Galyaltdinov S, Safina G, Kiiamov A, Dimiev AM
Membranes Based on Aminated Graphene Oxide with High Selectivity Toward Organic Substances.
Langmuir: 2024 Aug 6;
[PubMed:39107677] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Vanweser J, Diluiso G, Perez-Nunez L, Xiong V, Marcaccini G, Schettino M, Marron Mendes V
Breast Aesthetics, Motivational Factors in Surgery, and the Influence of Social Media and Pornography.
Aesthetic Plast Surg: 2024 Aug 6;
[PubMed:39107663] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sanchez KL, Harrington M, Lee C, Eberhardt JL
Observers of social media discussions about racial discrimination condemn denial but also adopt it.
Sci Rep: 2024 Aug 6, 14(1);18246
[PubMed:39107466] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Li X, Liu B, Wang J, Li S, Zhen X, Zhi J, Zou J, Li B, Shen Z, Zhang X, Zhang S, Nan CW
High-temperature capacitive energy stroage in polymer nanocomposites through nanoconfinement.
Nat Commun: 2024 Aug 6, 15(1);6655
[PubMed:39107376] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Liu H, Duan H, Zhang N, Ma Y, Liu G, Miller TR, Mao R, Xu M, Li J, Yang J
Rethinking time-lagged emissions and abatement potential of fluorocarbons in the post-Kigali Amendment era.
Nat Commun: 2024 Aug 6, 15(1);6687
[PubMed:39107310] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Qie S, Xiong H, Liu Y, Yan C, Wang Y, Tian L, Wang C, Sang N
Stanniocalcin 2 governs cancer cell adaptation to nutrient insufficiency through alleviation of oxidative stress.
Cell Death Dis: 2024 Aug 6, 15(8);567
[PubMed:39107307] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Fan Z, Cao C, Yang X, Yuan W, Qin F, Hu Y, Sun X, Liu G, Tian Y, Xu L
Interfacial Electronic Interactions Promoted Activation for Nitrate Electroreduction to Ammonia over Ag-modified Co3O4.
Angew Chem Int Ed Engl: 2024 Aug 6;e202410356
[PubMed:39107253] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chatterjee A, Roy T, Kumar Mishra V, Swarnakar S
Shatavarin-IV, a steroidal saponin from Asparagus racemosus, inhibits cell cycle progression and epithelial-to-mesenchymal transition in AGS cells under hyperglycemic conditions.
Steroids: 2024 Aug 4;109487
[PubMed:39106908] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mancha D, Brazão C, Sun L, de Vasconcelos JP, Correia T, Soares-de-Almeida L, Filipe P
Bullous Drug Eruption.
Clin Exp Dermatol: 2024 Aug 6;
[PubMed:39106845] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhu Y, Zhang G, Zhan S, Anme T
Longitudinal effects of parental adverse childhood experiences on offspring problematic media use: The serial mediating role of psychological distress and harsh discipline.
Child Abuse Negl: 2024 Aug 5, 155;106965
[PubMed:39106783] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mura M, Carucci C, Caddeo E, Sovová Š, Piludu M, Pekař M, Jachimska B, Parsons DF, Salis A
Specific buffer effects on the formation of BSA protein corona around amino-functionalized mesoporous silica nanoparticles.
J Colloid Interface Sci: 2024 Aug 5, 677(Pt A);540-547
[PubMed:39106779] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mallinson MA, Hardy M, Scally AJ
Developing CT workforce competencies: What knowledge and skills should we expect of an early career radiographer?
Radiography (Lond): 2024 Aug 5, 30(5);1355-1362
[PubMed:39106613] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Postma DJ, Heijkoop MLA, De Smet PAGM, Notenboom K, Leufkens HGM, Mantel-Teeuwisse AK
Identifying Medicine Shortages With the Twitter Social Network: Retrospective Observational Study.
J Med Internet Res: 2024 Aug 6, 26;e51317
[PubMed:39106483] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Varney AM, Smitten KL, Southam HM, Fairbanks SD, Robertson CC, Thomas JA, McLean S
In Vitro and In Vivo Studies on a Mononuclear Ruthenium Complex Reveals It is a Highly Effective, Fast-Acting, Broad-Spectrum Antimicrobial in Physiologically Relevant Conditions.
ACS Infect Dis: 2024 Aug 6;
[PubMed:39106475] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zara P, Solla P, Damato V, Sechi E
Teaching Video NeuroImage: The "Chameleon Eyes Sign" in Myasthenia Gravis.
Neurology: 2024 Sep 10, 103(5);e209756
[PubMed:39106424] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Dovhopola KS, Nabochenko OO, Kostenko TM
Teachers' assessment of the mental health of children with special educational needs during the war.
Wiad Lek: 2024, 77(6);1217-1223
[PubMed:39106383] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Xu S, Wang J
Study on decarbonization trajectories and policy implications for China: A comparative analysis of carbon peak nations.
PLoS One: 2024, 19(8);e0308394
[PubMed:39106274] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Segneri L, Babina N, Hammerschmidt T, Fronzetti Colladon A, Gloor PA
Too much focus on your health might be bad for your health: Reddit user's communication style predicts their Long COVID likelihood.
PLoS One: 2024, 19(8);e0308340
[PubMed:39106232] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Qualls KA
An Integrative Review of Military Sexual Trauma in Women Veterans: Understanding Experiences and Impacts.
Issues Ment Health Nurs: 2024 Aug 6;1-9
[PubMed:39106213] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hemal S, Sobhani S, Hakimi K, Rosenberg S, Gill I
Single-Port Robot assisted partial cystectomy for urachal adenocarcinoma.
Int Braz J Urol: 2024 Sep-Oct, 50(5);659-660
[PubMed:39106120] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Wasilewski MB, Vijayakumar A, Szigeti Z, Mayo A, Desveaux L, Shaw J, Hitzig SL, Simpson R
Patient and Provider Experiences With Compassionate Care in Virtual Physiatry: Qualitative Study.
J Med Internet Res: 2024 Aug 6, 26;e51878
[PubMed:39106094] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Cho H, Li W, Lopez R
A Multidimensional Approach for Evaluating Reality in Social Media: Mixed Methods Study.
J Med Internet Res: 2024 Aug 6, 26;e52058
[PubMed:39106092] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ofori-Ansah S, Evans M, Baillie L, Moorley C
Young adults with kidney failure lived experiences of kidney replacement therapy decision-making.
J Ren Care: 2024 Aug 6;
[PubMed:39106089] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Dahan S, Bloemhof-Bris E, Segev R, Abramovich M, Levy G, Shelef A
Anxiety, post-traumatic symptoms, media-induced secondary trauma, post-traumatic growth, and resilience among mental health workers during the Israel-Hamas war.
Stress Health: 2024 Aug 6;e3459
[PubMed:39106087] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gunwhy ER, Hines CDG, Green C, Laitinen I, Tadimalla S, Hockings PD, Schütz G, Kenna JG, Sourbron S, Waterton JC
Assessment of hepatic transporter function in rats using dynamic gadoxetate-enhanced MRI: a reproducibility study.
MAGMA: 2024 Aug 6;
[PubMed:39105950] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ross M, Jadli AS, Meechem M, Patel VB
Isolation and Characterization of Extracellular Vesicles from Cell Culture Media.
Methods Mol Biol: 2024, 2835;165-172
[PubMed:39105915] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Sorour MI, Kistler KA, Marcus AH, Matsika S
Molecular Dynamical and Quantum Mechanical Exploration of the Site-Specific Dynamics of Cy3 Dimers Internally Linked to dsDNA.
J Phys Chem B: 2024 Aug 6;
[PubMed:39105720] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang Q, Cai M, Ma Y, Zhang Y, Chen S, Zhang S
Phenylboronic Acid-Functionalized Ratiometric Surface-Enhanced Raman Scattering Nanoprobe for Selective Tracking of Hg(2+) and CH(3)Hg(+) in Aqueous Media and Living Cells.
Anal Chem: 2024 Aug 6;
[PubMed:39105712] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Dai X, Zhou XY, Chen PF, Gong ZL, Wang ZP, Wang D
The Application Value of Using Semiquantitative and Quantitative Parameters in Multimodal Ultrasound to Distinguish Between Benign and Malignant BI-RADS 4 Lesions.
Ultrasound Q: 2024 Sep 1, 40(3);
[PubMed:39105688] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Olencewicz G, Holt R, Sharma M
Phonological awareness and reading outcomes in children with a history of otitis media: a review.
Int J Audiol: 2024 Aug 6;1-8
[PubMed:39105670] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hawkins D, Thomas K, Landsbergis P
Occupational inequalities in mortality from cardiovascular disease, 2020-2021.
Am J Ind Med: 2024 Aug 6;
[PubMed:39105628] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

John CM, Otala SA, Jarvis GA
Cyclization increases bactericidal activity of arginine-rich cationic cell-penetrating peptide for Neisseria gonorrhoeae.
Microbiol Spectr: 2024 Aug 6;e0099724
[PubMed:39105587] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Riediger N.D. PhD, Waugh A. MSc, Parker B. PhD, Russell C. PhD, Bombak A.E. PhD
Exploring Student Perspectives of the Dietetics Profession Using a Professional Socialization Lens.
Can J Diet Pract Res: 2024 Aug 6;1-7
[PubMed:39105566] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yoon JK, Han DH, Lee S, Choi JY, Choi GH, Kim DY, Kim MJ
Intraindividual comparison of prognostic imaging features of HCCs between MRIs with extracellular and hepatobiliary contrast agents.
Liver Int: 2024 Aug 6;
[PubMed:39105495] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

De Rop L, Bos DA, Stegeman I, Holtman G, Ochodo EA, Spijker R, Otieno JA, Alkhlaileh F, Deeks JJ, Dinnes J, Van den Bruel A, McInnes MD, Leeflang MM, Cochrane COVID-19 Diagnostic Test Accuracy Group, Verbakel JY
Accuracy of routine laboratory tests to predict mortality and deterioration to severe or critical COVID-19 in people with SARS-CoV-2.
Cochrane Database Syst Rev: 2024 Aug 6, 8(8);CD015050
[PubMed:39105481] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Sato M, Tamura Y, Murao Y, Yorikawa F, Katsumata Y, Watanabe S, Zen S, Kodera R, Oba K, Toyoshima K, Chiba Y, Araki A
Coexistence of high visceral fat area and sarcopenia is associated with atherosclerotic markers in old-old patients with diabetes: A cross-sectional study.
J Diabetes Investig: 2024 Aug 6;
[PubMed:39105252] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Haeruddin H, Soegianto A, Purwanti F, Rahman A, Payus CM, Effendi H
Spatial Distribution and Pollution Assessment of Metals in Sediments of the Babon River, Central Java, Indonesia.
Scientifica (Cairo): 2024, 2024;2065513
[PubMed:39104913] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kebede N, Delie AM, Ketema Bogale E, Anagaw TF, Talie Fenta E, Adal O
Individual and community-level factors of availability of observed water, soap, and other cleansing agents for hand washing practice in Ethiopia: a multilevel mixed-effects analysis of the 2021 performance monitoring for action Ethiopia.
Front Public Health: 2024, 12;1418379
[PubMed:39104897] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Aldabergenova TK, Eniola AA, Orynbayeva BS, Sarsenbayeva FS, Askarova NS, Shitu S
Exploration of Mental Health and Well-Being of Healthcare Professionals During the COVID-19 Pandemic.
Glob J Qual Saf Healthc: 2024 Aug, 7(3);106-114
[PubMed:39104796] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Fox A, Leonard GD, Adzibolosu N, Wong T, Tedja R, Sharma S, Gogoi R, Morris R, Mor G, Fehl C, Alvero AB
Adipose microenvironment promotes hypersialylation of ovarian cancer cells.
Front Oncol: 2024, 14;1432333
[PubMed:39104719] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Porter E, O'Connor C, Murphy M
Re-engagement, quality of life, and burden of treatment in adults on dupilumab for severe atopic dermatitis-A mixed methods study.
Skin Health Dis: 2024 Aug, 4(4);e372
[PubMed:39104652] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hughes O, Shelton KH, Thompson AR
Healthcare professionals' views on psychological support for children and families affected by skin conditions in the UK: A qualitative study.
Skin Health Dis: 2024 Aug, 4(4);e376
[PubMed:39104645] [WorldCat.org: ISSN ESSN ] [DOI] ( )

de Baun H, Cerri-Droz P, Khan S, Alper D, Rao B
A cross-sectional analysis of TikTok's most popular dermal filler videos.
Skin Health Dis: 2024 Aug, 4(4);e390
[PubMed:39104643] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Safaefar F, Karamdel J, Veladi H, Maleki M
Design and implementation of a lab-on-a-chip for assisted reproductive technologies.
Bioimpacts: 2024, 14(4);28902
[PubMed:39104621] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ma J, Gelie N, Zhu M, Ma X, Han C
Quantifying ocular microcirculation in hypertension patients with carotid artery stenosis.
Front Neurosci: 2024, 18;1361413
[PubMed:39104611] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Rammali S, Ciobică A, El Aalaoui M, Rahim A, Kamal FZ, Dari K, Khattabi A, Romila L, Novac B, Petroaie A, Bencharki B
Exploring the antimicrobial and antioxidant properties of Lentzea flaviverrucosa strain E25-2 isolated from Moroccan forest soil.
Front Microbiol: 2024, 15;1429035
[PubMed:39104582] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Quadros Santos Rocha J, da Silva LS, Pintanel Freitas M, Mendes Delpino F, Rombaldi AJ, de Almeida Paz I, Schröeder N, Santos Feter J, Nascimento da Silva C, Leal da Cunha L, Cassuriaga J, Feter N, Cozzensa da Silva M, Pereira Vieira Y, Lucia Caputo E, Fossati Reichert F
The use of digital platforms and physical activity practice in a population from southern Brazil: Findings from the PAMPA Cohort.
Prev Med Rep: 2024 Aug, 44;102816
[PubMed:39104568] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lemana Ii HE, Ulla MB, Kohnke L
TikTok for language teachers: Affordances of TikTok on teachers' identity and emotional vulnerability.
Heliyon: 2024 Jul 30, 10(14);e34388
[PubMed:39104493] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Mitwalli H, Alfurayh N
Tattoo Regret, Complications, and Removal: A Cross-Sectional Study among Tattooed Individuals in Saudi Arabia.
Dermatol Res Pract: 2024, 2024;5673785
[PubMed:39104402] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Li J, Yang X
Does exposure necessarily lead to misbelief? A meta-analysis of susceptibility to health misinformation.
Public Underst Sci: 2024 Aug 6;9636625241266150
[PubMed:39104361] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Malapally A, Bruckmüller S
Talking About Privilege: Framing Inequality as Advantage Is More Likely for Inequality in Positive Than in Negative Outcomes.
Pers Soc Psychol Bull: 2024 Aug 6;1461672241265779
[PubMed:39104359] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Stoll E, Monedero P, Martin-Moreno PL, Garcia-Fernandez N
[Biomarkers of oxidative stress and inflammation in contrast-associated acute kidney injury].
An Sist Sanit Navar: 2024 Aug 5, 47(2);
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Nypaver C, Yeager A
Innovations in Preconception Care: Optimizing Health for All Individuals.
J Midwifery Womens Health: 2024 Aug 6;
[PubMed:39104297] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang Z, Ong LJY, Gan Y, Pereira JM, Zhang J, Kasetsirikul S, Toh YC, Sauret E
PoroFluidics: deterministic fluid control in porous microfluidics.
Lab Chip: 2024 Aug 6;
[PubMed:39104280] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wright PJ, Herbenick D
Adolescent Pornography Exposure, Condom Use, and the Moderating Role of Parental Sexual Health Communication: Replication in a U.S. Probability Sample.
Health Commun: 2024 Aug 5;1-9
[PubMed:39104215] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Atef N
Physicians' use of social media: Where cultural difference appears to overlap.
Med Educ: 2024 Aug 5;
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Butler J, Sawaya Y, Seabrook JA, Madill J, Twynstra J
Canadian Midwives' Experiences with Nutrition in Their Training and Practice: A Cross-Sectional Study.
J Midwifery Womens Health: 2024 Aug 5;
[PubMed:39104149] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Choonhawarakorn K, Kasemkhun P, Leelataweewud P
Effectiveness of a message service on child oral health practice via a social media application: A randomized controlled trial.
Int J Paediatr Dent: 2024 Aug 5;
[PubMed:39104027] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Finklea FB, Hashemi M, Tian Y, Hammons H, Halloin C, Triebert W, Zweigerdt R, Lipke EA
Chemically defined production of engineered cardiac tissue microspheres from hydrogel-encapsulated pluripotent stem cells.
Biotechnol Bioeng: 2024 Aug 5;
[PubMed:39104025] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Han Y, Yang R, Mao X, Li R, Song Y, Shi H, Feng Y, An X, Zha D, Chen Y
Comparison of the Impacts of Different Middle Ear Mucosal Conditions on Type I Tympanoplasty Outcomes.
J Otolaryngol Head Neck Surg: 2024 Jan-Dec, 53;19160216241267724
[PubMed:39104022] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Sun Y, Li T, Zhou G, Zhou Y, Wu Y, Xu J, Chen J, Zhong S, Zhong D, Liu R, Lu G, Li Y
Relationship between deltamethrin resistance and gut symbiotic bacteria of Aedes albopictus by 16S rDNA sequencing.
Parasit Vectors: 2024 Aug 5, 17(1);330
[PubMed:39103931] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Deng Z, Grépin KA
Achilles' heel: elderly COVID-19 vaccination policy in China.
Health Res Policy Syst: 2024 Aug 5, 22(1);90
[PubMed:39103903] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Niknam F, Sharifian R, Bashiri A, Mardani M, Akbari R, Bastani P
Technological aspects and recommendations for applying teledentistry in oral medicine: a scoping review.
Syst Rev: 2024 Aug 5, 13(1);209
[PubMed:39103893] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang D, He J, Chen Y, Liu B, Wu Z, Pan X, Niu X
Harnessing in vivo synthesis of bioactive multiarylmethanes in Escherichia coli via oxygen-mediated free radical reaction induced by simple phenols.
Microb Cell Fact: 2024 Aug 6, 23(1);219
[PubMed:39103877] [WorldCat.org: ISSN ESSN ] [DOI] ( e) 

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Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
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Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
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Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
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<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

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