Difference between revisions of "Notebook"
| Line 6: | Line 6: | ||
*** [https://docs.docker.com/engine/reference/builder/ dockerfile] | *** [https://docs.docker.com/engine/reference/builder/ dockerfile] | ||
*** [https://docs.docker.com/samples/alpine/ Alpine] minimal Linux image (5MB) | *** [https://docs.docker.com/samples/alpine/ Alpine] minimal Linux image (5MB) | ||
| + | ***[https://developer.atlassian.com/blog/2015/08/minimal-java-docker-containers/ minimal Java image] | ||
*TOCSY | *TOCSY | ||
**[http://chem.ch.huji.ac.il/nmr/techniques/2d/tocsy/tocsy.html] | **[http://chem.ch.huji.ac.il/nmr/techniques/2d/tocsy/tocsy.html] | ||
Revision as of 16:55, 21 June 2017
Contents
2016-06-21
- dockerization
- images vs containers: create a docker image which runs as a container
- boot2docker if you work on a mac
- creating your first Dockerfile
- dockerfile
- Alpine minimal Linux image (5MB)
- minimal Java image
- TOCSY
2016-06-19/20
- Metabomatching: feature Import Metabolite Associations
- Added a parameter to out file: "kegg_known_x_1"
- Fixed associated_snips: the tag can be repeated, the keggid must be unique.
- Read loma into matrix in one go rather than iterating over each line of the file.
2016-06-12/15
Metabolomics: from data to publication
2016-06-07
- Preparing for SIB's "Metabolomics: from data to publication"
- LC-MS raw data
- Multivariate analysis
- In Situ Metabolomics
- R
- intro
- bnlearn R package (journal club)
- Open-ended brainstorming with Rosanna
2016-06-06
- Metabomatching: adding feature Import Metabolite Associations
- done: waiting for code review w/ Rico
- Bayesian Networks: background reading for journal club
2016-06-02
setsid [program]to fork a process
- Metabomatching: adding feature Import Metabolite Associations
- creating functions
- looping through structures
2016-06-01
- p-values vs. Bayes factors with Marco and Daniele
- Q-Q plots with Reyhan
- GIT and matlab
- "From Bench to Market" @ EPFL
