Difference between revisions of "Notebook"
| Line 1: | Line 1: | ||
== 2016-06-23 == | == 2016-06-23 == | ||
*dockerization | *dockerization | ||
| − | ** Created a | + | ** Created a hello world Octave container (from Ubuntu) |
| − | **[http://containertutorials.com/alpine/get_started.html Alpine]: | + | **[http://containertutorials.com/alpine/get_started.html Alpine]: bash is not available. |
** [https://docs.docker.com/get-started/ Docker guide] | ** [https://docs.docker.com/get-started/ Docker guide] | ||
| − | * | + | *STOCSY |
| − | * [http://chem.ch.huji.ac.il/nmr/techniques/2d/tocsy/tocsy.html | + | ** Roger's code on urine NMR input |
| + | **Dockerized Roger's code | ||
| + | ** [http://chem.ch.huji.ac.il/nmr/techniques/2d/tocsy/tocsy.html theory] [TODO] | ||
* PASCAL: Introduction [TODO] | * PASCAL: Introduction [TODO] | ||
== 2016-06-22 == | == 2016-06-22 == | ||
*dockerization | *dockerization | ||
| − | ** Created a hello world Java container | + | ** Created a hello world Java container (from Alpine) |
*Sven's research proposal: detailed research plan | *Sven's research proposal: detailed research plan | ||
Revision as of 16:35, 23 June 2017
Contents
2016-06-23
- dockerization
- Created a hello world Octave container (from Ubuntu)
- Alpine: bash is not available.
- Docker guide
- STOCSY
- Roger's code on urine NMR input
- Dockerized Roger's code
- theory [TODO]
- PASCAL: Introduction [TODO]
2016-06-22
- dockerization
- Created a hello world Java container (from Alpine)
- Sven's research proposal: detailed research plan
2016-06-21
- dockerization
- images vs containers: create a docker image which runs as a container
- boot2docker if you work on a mac
- creating your first Dockerfile
- dockerfile
- Alpine running a minimal Linux image (5MB)
- minimal Java image
2016-06-19/20
- Metabomatching: feature Import Metabolite Associations
- Added a parameter to out file: "kegg_known_x_1"
- Fixed associated_snips: the tag can be repeated, the keggid must be unique.
- Read loma into matrix in one go rather than iterating over each line of the file.
2016-06-12/15
Metabolomics: from data to publication
2016-06-07
- Preparing for SIB's "Metabolomics: from data to publication"
- LC-MS raw data
- Multivariate analysis
- In Situ Metabolomics
- R
- intro
- bnlearn R package (journal club)
- Open-ended brainstorming with Rosanna
2016-06-06
- Metabomatching: adding feature Import Metabolite Associations
- done: waiting for code review w/ Rico
- Bayesian Networks: background reading for journal club
2016-06-02
setsid [program]to fork a process
- Metabomatching: adding feature Import Metabolite Associations
- creating functions
- looping through structures
2016-06-01
- p-values vs. Bayes factors with Marco and Daniele
- Q-Q plots with Reyhan
- GIT and matlab
- "From Bench to Market" @ EPFL
