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| | Ideally, someone from the group should volunteer to choose a paper for each meeting, and should update this page and email the paper around on the '''Friday the week before the meeting'''. If a volunteer is not forthcoming, Micha may encourage someone to volunteer. Alternatively, people can also give '''tutorials on any scientific topic''' that may be of interest to other members of the group. The [[tutorial marketplace]] is the place to set and see the supply and demand for tutorials. | | Ideally, someone from the group should volunteer to choose a paper for each meeting, and should update this page and email the paper around on the '''Friday the week before the meeting'''. If a volunteer is not forthcoming, Micha may encourage someone to volunteer. Alternatively, people can also give '''tutorials on any scientific topic''' that may be of interest to other members of the group. The [[tutorial marketplace]] is the place to set and see the supply and demand for tutorials. |
| | | | |
| − | == 5th February 2009 ==
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| | | | |
| − | Toby will present:
| + | == January 7 == |
| − | A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and
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| − | Implications for Functional Genomics, by Juliane Schäfer and Korbinian Strimmer (2005)
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| − | ''Statistical Applications in Genetics and Molecular Biology''
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| − | '''4''':1 Article 32.
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| − | [http://dx.doi.org/10.2202/1544-6115.1175 doi:10.2202/1544-6115.1175]
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| − | [http://www.bepress.com/sagmb/vol4/iss1/art32 link to paper]
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| | | | |
| − | == 12th February 2009 == | + | == January 14 == |
| | | | |
| − | Gábor will present:
| + | == January 21 == |
| − | <biblio>
| |
| − | #wagner pmid=16087882
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| − | </biblio>
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| | | | |
| | + | == January 28 == |
| | | | |
| − | [exceptionally at 9:30-10:30]
| + | == February 4 == |
| | | | |
| − | == 19th February 2009 == | + | == February 11 == |
| | | | |
| − | Zoltán will present:
| + | == February 18 == |
| − | The Optimal Discovery Procedure: A New Approach to Simultaneous Significance Testing, by John D. Storey
| |
| − | (2007) ''J. R. Statist. Soc. B'' '''69''':3 pp.347-368.
| |
| − | [http://dx.doi.org/10.1111/j.1467-9868.2007.005592.x doi:10.1111/j.1467-9868.2007.005592.x]
| |
| − | [http://www3.interscience.wiley.com/journal/118490765/abstract link to paper]
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| | | | |
| − | == 26th February 2009 == | + | == February 25 == |
| − | Bastian will present : A "Silent" Polymorphism in the MDR1 Gene Changes Substrate Specificity,DOI: 10.1126/science.1135308, Science 315, 525 (2007); Chava Kimchi-Sarfaty, et al.
| |
| − | [http://www.sciencemag.org/cgi/content/full/315/5811/525 link to paper]
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| | | | |
| − | This meeting is at 9:30 am instead of the usual time.
| + | == March 4 == |
| | | | |
| − | == 5th March 2009 == | + | == March 11 == |
| − | '''Date and time change: Wednesday 3pm-4pm'''
| |
| | | | |
| − | Karen will present:
| + | == March 18 == |
| − | Multiple Hypothesis Testing in Microarray Experiments by Sandrine Dudoit, Juliet Popper Shaffer and Jennifer C. Boldrick
| |
| − | Statistical Science, Vol. 18, No. 1 (Feb., 2003), pp. 71-103.
| |
| − | [http://www.jstor.org/stable/3182872 link to paper]
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| | | | |
| − | == 12th March 2009 == | + | == March 25 == |
| − | Aitana will present:
| |
| − | <biblio>
| |
| − | #kashtan pmid=17698964
| |
| − | </biblio>
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| | | | |
| − | == 19th March 2009 == | + | == April 1st == |
| − | '''Time and room change: 2pm-3pm 1st floor conference room'''
| |
| | | | |
| | + | == April 8 == |
| | | | |
| − | Diana is presenting:
| + | == April 15 == |
| | | | |
| − | '''Drug—target network'''
| + | == April 22 == |
| − | Muhammed A Yıldırım, Kwang-Il Goh, Michael E Cusick, Albert-László Barabási & Marc Vidal
| |
| | | | |
| − | Nature Biotechnology 25, 1119 - 1126 (2007)
| + | == April 29 == |
| − | Published online: 5 October 2007 | doi:10.1038/nbt1338
| |
| − | http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html
| |
| − | | |
| − | == 26th March 2009 == | |
| − | '''Time change: 2pm-3pm'''
| |
| − | | |
| − | Micha will present the following paper:
| |
| − | <biblio>
| |
| − | #millar pmid=16729048
| |
| − | </biblio>
| |
| − | http://www.nature.com/msb/journal/v1/n1/synopsis/msb4100018.html
| |
| − | | |
| − | == 2nd April 2009 ==
| |
| − | '''1pm-2pm'''
| |
| − | | |
| − | Sascha will present :
| |
| − | | |
| − | Molecular Systems Biology 4 Article number: 176
| |
| − | | |
| − | doi:10.1038/msb.2008.14
| |
| − | | |
| − | Theoretical and experimental approaches to understand morphogen gradients
| |
| − | | |
| − | Marta Ibañes1 & Juan Carlos Izpisúa Belmonte
| |
| − | | |
| − | http://www.nature.com/msb/journal/v4/n1/full/msb200814.html
| |
| − | | |
| − | == 14th May 2009 ==
| |
| − | | |
| − | Armand will present
| |
| − | | |
| − | Accurate whole human genome sequencing using reversible terminator chemistry
| |
| − | Nature 456, 53-59 (6 November 2008) | doi:10.1038/nature07517
| |
| − | | |
| − | [http://www.nature.com/nature/journal/v456/n7218/full/nature07517.html link to paper]
| |
| − | | |
| − | == 2nd July 2009 ==
| |
| − | Micha will present
| |
| − | | |
| − | == 9th July 2009 ==
| |
| − | | |
| − | Gabor will present:
| |
| − | | |
| − | Note on the presidential election in Iran, June 2009
| |
| − | | |
| − | http://www-personal.umich.edu/~wmebane/note18jun2009.pdf
| |
| − | | |
| − | == 16th July 2009 ==
| |
| − | | |
| − | Zoltan will present: Introduction to Measure Theory
| |
| − | | |
| − | == 13th August 2009 ==
| |
| − | Sven: "Smooth Connection Functions" [http://www.iop.org/EJ/abstract/0305-4470/35/17/305/]
| |
| − | ... and the most important theorem in Physics (in Sven's view)!
| |
| − | | |
| − | == 27th August 2009 ==
| |
| − | | |
| − | | |
| − | Karen
| |
| − | | |
| − | Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification.
| |
| − | Lee SI, Pe'er D, Dudley AM, Church GM, Koller D.
| |
| − | Proc Natl Acad Sci U S A. 2006 Sep 19;103(38):14062-7.
| |
| − | | |
| − | == 10th September 2009 ==
| |
| − | | |
| − | Diana will give a flavour of the various senses of autonomy and their relevance to clinical practice
| |
| − | | |
| − | == 17th September 2009 ==
| |
| − | | |
| − | Armand will present Perl5 Best Practice and Perl6 Overview
| |
| − | | |
| − | == 24th September 2009 ==
| |
| − | | |
| − | Aitana will present: An(other) inconvenient truth...
| |
| − | <biblio>
| |
| − | #kaufman pmid=19729653
| |
| − | </biblio>
| |
| − | | |
| − | | |
| − | == October 8th 2009 ==
| |
| − | | |
| − | Micha will present
| |
| − | <biblio>
| |
| − | #kang pmid=18385116
| |
| − | </biblio>
| |
| − | with an introduction to restricted (or residual) maximum likelihood estimation (REML) and mixed models.
| |
| − | | |
| − | == October 22th 2009 ==
| |
| − | | |
| − | Andreas will present a short introduction to hot research topics and state-of-the-art numerical methods in condensed matter physics:
| |
| − | | |
| − | If you like fancy descriptions, one could say:
| |
| − | High-temperature superconductivity, quantum hall physics, ultra-cold atomic gases and quantum computation using
| |
| − | exact diagonalization, density-matrix renormalization group calculations and quantum Monte-Carlo simulations.
| |
| − | Or in other words, I'll try to explain you why even 20 years after the discovery of "high-temperature" (roughly -200°C)
| |
| − | superconductors, no one understands the mechanism behind it and why defense departments sponsor quantum computing
| |
| − | centers.
| |
| − | | |
| − | == November 26th 2009 ==
| |
| − | | |
| − | Sascha will present an introduction to COMSOL.
| |
| − | | |
| − | COMSOL is a matlab-based interface for the resolution of differential equations using Finite Element Methods (FEM).
| |
| − | I'll first give a very short introduction on FEM and COMSOL then present the solution of a concrete simple problem.
| |
| − | | |
| − | == December 10th 2009 ==
| |
| − | | |
| − | Micha will discuss the following paper
| |
| − | <biblio>
| |
| − | #ioannidis0 pmid=16060722
| |
| − | </biblio>
| |
| − | and the related
| |
| − | [http://www.bepress.com/jhubiostat/paper135/ controvery]
| |
