Difference between revisions of "Journal Club (spring 2012)"
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Journal Club is every Thursday, from 1-2pm, in the small meeting room.  Feel free to bring your lunch.  We also have a [[Group Meeting]].
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Journal Club is every other Thursday, from 12-13, in the small meeting room.  Feel free to bring your lunch.
  
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Ideally, someone from the group should volunteer to choose a paper for each meeting, and should update this page and email the paper around on the '''Friday the week before the meeting'''.  If a volunteer is not forthcoming, [[user:Toby|Toby]] will encourage someone to volunteer.  
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The schedule is indicated below. If it is your turn, please indicate the paper you are presenting by Monday and update the calendar accordingly. It can be any paper of scientific interest. Alternatively, you can also give '''tutorials on any scientific topic''' that may be of interest to other members of the group or invite an external speaker.
  
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== 5th February 2009 ==
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== January 19 ==
  
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Toby will present:
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Sandra will present
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A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and
 
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Implications for Functional Genomics, by Juliane Schäfer and Korbinian Strimmer (2005)
 
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''Statistical Applications in Genetics and Molecular Biology''
 
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'''4''':1 Article 32.
 
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[http://dx.doi.org/10.2202/1544-6115.1175 doi:10.2202/1544-6115.1175]
 
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[http://www.bepress.com/sagmb/vol4/iss1/art32 link to paper]
 
  
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== 12th February 2009 ==
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== February 2nd ==
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Sven: "Connecting points by Smooth Connection Functions defines shapes in the smoothest possible way" ([http://ceur-ws.org/Vol-812/paper2.pdf Paper])
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== March 2 (Friday at 2) ==
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David will present the following paper
  
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Gábor will present:
 
 
<biblio>
 
<biblio>
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#wagner pmid=16087882
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# yang2010 pmid=20562875
 
</biblio>
 
</biblio>
  
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== March 15 ==
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Zoltán will present:
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<biblio>
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#aa pmid=22391999
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</biblio>
  
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[exceptionally at 9:30-10:30]
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== March 29  ==
  
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== 19th February 2009 ==
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Micha will talk about statistical analysis of rnaseq data, with the following papers:
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<biblio>
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#ab pmid=20167110
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#bb pmid=20979621
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</biblio>
  
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Zolt&aacute;n will present:
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== April 12 ==
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The Optimal Discovery Procedure: A New Approach to Simultaneous Significance Testing, by John D. Storey
 
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(2007) ''J. R. Statist. Soc. B'' '''69''':3 pp.347-­368.
 
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[http://dx.doi.org/10.1111/j.1467-9868.2007.005592.x doi:10.1111/j.1467-9868.2007.005592.x]
 
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[http://www3.interscience.wiley.com/journal/118490765/abstract link to paper]
 
  
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== 26th February 2009 ==
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Tanguy will present  
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Bastian will present : A "Silent" Polymorphism in the MDR1 Gene Changes Substrate Specificity,DOI: 10.1126/science.1135308, Science 315, 525 (2007); Chava Kimchi-Sarfaty, et al.
 
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[http://www.sciencemag.org/cgi/content/full/315/5811/525 link to paper]
 
  
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This meeting is at 9:30 am instead of the usual time.
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<biblio>
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#bc pmid=22065777
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</biblio>
  
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== 5th March 2009 ==
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== April 26 ==
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'''Date and time change:  Wednesday 3pm-4pm'''
 
  
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Karen will present:  
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Nadya is going to discuss following paper:
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Multiple Hypothesis Testing in Microarray Experiments by Sandrine Dudoit, Juliet Popper Shaffer and Jennifer C. Boldrick
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<biblio>
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Statistical Science, Vol. 18, No. 1 (Feb., 2003), pp. 71-103. 
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#Kolesov pmid=17709750
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[http://www.jstor.org/stable/3182872 link to paper]
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</biblio>
  
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== 12th March 2009 ==
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== May 24 ==
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Aitana will present:  
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Diana will present the following paper:
 
<biblio>
 
<biblio>
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#kashtan pmid=17698964
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# Stephens pmid=19590391
 
</biblio>
 
</biblio>
  
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== 19th March 2009 ==
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== May 31 ==
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'''Time and room change: 2pm-3pm 1st floor conference room'''
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Aurélien will present:
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8. The "impact factor" revisited
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Peng Dong, Marie Loh and Adrian Mondry*
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Link: http://www.bio-diglib.com/content/2/1/7
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== June 7 ==
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Sascha
  
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== June 21 ==
  
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Diana is presenting:
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Rico
  
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'''Drug—target network'''
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== July 5 ==
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Muhammed A Yi nodotldi nodotri nodotm1,2,3, Kwang-Il Goh1,4,5, Michael E Cusick1,2, Albert-László Barabási1,4,6 & Marc Vidal1,2
 
  
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Nature Biotechnology 25, 1119 - 1126 (2007)
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== July 19 ==
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Published online: 5 October 2007 | doi:10.1038/nbt1338
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Tim:
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http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html
 
  
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== 26th March 2009 ==
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[http://www.sciencedirect.com/science/article/pii/S0092867412000049 Aging, Rejuvenation, and Epigenetic Reprogramming: Resetting the Aging Clock]
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'''Time change: 2pm-3pm'''
 

Latest revision as of 12:53, 5 September 2012

Journal Club is every other Thursday, from 12-13, in the small meeting room. Feel free to bring your lunch.

The schedule is indicated below. If it is your turn, please indicate the paper you are presenting by Monday and update the calendar accordingly. It can be any paper of scientific interest. Alternatively, you can also give tutorials on any scientific topic that may be of interest to other members of the group or invite an external speaker.

January 19

Sandra will present

February 2nd

Sven: "Connecting points by Smooth Connection Functions defines shapes in the smoothest possible way" (Paper)

March 2 (Friday at 2)

David will present the following paper

<biblio>

  1. yang2010 pmid=20562875

</biblio>

March 15

Zoltán will present: <biblio>

  1. aa pmid=22391999

</biblio>

March 29

Micha will talk about statistical analysis of rnaseq data, with the following papers: <biblio>

  1. ab pmid=20167110
  2. bb pmid=20979621

</biblio>

April 12

Tanguy will present

<biblio>

  1. bc pmid=22065777

</biblio>

April 26

Nadya is going to discuss following paper: <biblio>

  1. Kolesov pmid=17709750

</biblio>

May 24

Diana will present the following paper: <biblio>

  1. Stephens pmid=19590391

</biblio>

May 31

Aurélien will present:

8. The "impact factor" revisited Peng Dong, Marie Loh and Adrian Mondry*

Link: http://www.bio-diglib.com/content/2/1/7

June 7

Sascha

June 21

Rico

July 5

July 19

Tim:

Aging, Rejuvenation, and Epigenetic Reprogramming: Resetting the Aging Clock

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