ISA

Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

• Microsoft Windows (32 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Microsoft Windows (64 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Mac OSX (Leopard)
  Download and install this file.
• Linux and Unix systems, R source package
  Download this file, save it in a temporary directory, and start R. Install the downloaded package using the install.packages() function: give the full path of the saved file and use the 'repos=NULL' argument of install.packages().

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Musilli MG, Fuller SM, Wyatt B, Ryals TR, Haischer-Rollo G, Drumm CM, Vereen RJ, Plowden TC, Blevins EM, Spalding CN, Konopasky A, Lutgendorf MA
Qualitative Analysis of the Lived Experience of Reproductive and Pediatric Health Care in the Military Health Care System.
Mil Med: 2024 May 23;
[PubMed:38781008] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Cornell S, Peden AE
Visual "Scrollytelling": Mapping Aquatic Selfie-Related Incidents in Australia.
Interact J Med Res: 2024 May 23, 13;e53067
[PubMed:38781002] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Maruri-Aransolo A, de Dios Caballero J, Michelena M, Medina-Pascual MJ, Carrasco G, Asensio O, Cols M, Cantón R, GEIFQ group
Evaluation of CHROMagar™ B. cepacia agar for the detection of Burkholderia cepacia complex species from sputum samples of patients with cystic fibrosis.
Eur J Clin Microbiol Infect Dis: 2024 May 23;
[PubMed:38780755] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Golan-Tripto I, Danino D, De Waal L, Akel K, Dizitzer-Hillel Y, Tal A, Langman Y, Goldbart A
Viral load in hospitalized infants with respiratory syncytial virus bronchiolitis: a three-way comparative analysis.
Eur J Pediatr: 2024 May 23;
[PubMed:38780651] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li S, Deng K, Qiu J, Wang P, Yin D, Xie Y, Yu Y
Based on Gadolinium Ethoxybenzyl DTPA-Enhanced MRI: Diagnostic Performance of the Category-Modified LR-5 Criteria in Patients At Risk for Hepatocellular Carcinoma.
Technol Cancer Res Treat: 2024 Jan-Dec, 23;15330338241256859
[PubMed:38780516] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Takeda T, Watanabe Y, Sato K, Numakura T, Onodera K, Notsuda H, Niikawa H, Okada Y
An indocyanine green fluorescence-guided operation for diagnosing and treating pleuroperitoneal communication.
Multimed Man Cardiothorac Surg: 2024 May 23, 2024;
[PubMed:38780368] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

George I, Kalairaj MS, Zimmern PE, Ware TH, Subashchandrabose S
Competitive fitness of asymptomatic bacteriuria E. coli strain 83972 against uropathogens in human urine.
Infect Immun: 2024 May 23;e0017324
[PubMed:38780216] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fortney KR, Brothwell JA, Batteiger TA, Duplantier R, Katz BP, Spinola SM
A Haemophilus ducreyi strain lacking the yfeABCD iron transport system is virulent in human volunteers.
Infect Immun: 2024 May 23;e0005824
[PubMed:38780215] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Siddique JI, Farooq U, Ali U, Ahmed A
Ion-Induced Swelling Behavior of Articular Cartilage due to Non-Newtonian Flow and Its Effects on Fluid Pressure and Solid Displacement.
Crit Rev Biomed Eng: 2024, 52(4);17-28
[PubMed:38780103] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Rex M C, Debroy A, Mukherjee A
The impact of nTiO(2) and GO (graphene oxide), and their combinations, on freshwater Chlorella sp.: a comparative study in lake water and BG-11 media.
Environ Sci Process Impacts: 2024 May 23;
[PubMed:38780043] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liu YM, Wang HY, Wei CH, Li JP, Wang Y, Ma WZ, Jia H
Exploring miR-21 as a key regulator in two distinct approaches of bone marrow stromal cells differentiation into Schwann-like cells.
Synapse: 2024 May, 78(3);e22293
[PubMed:38779935] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Evans WD, Bingenheimer JB, Long MW, Ndiaye K, Donati D, Rao NM, Akaba S, Agha S
Randomised experimental evaluation of a social media campaign to promote COVID-19 vaccination in Nigeria.
J Glob Health: 2024 May 24, 14;05018
[PubMed:38779876] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Franklin MK, Sawada H, Ito S, Howatt DA, Amioka N, Liang CL, Zhang N, Graf DB, Moorleghen JJ, Katsumata Y, Lu HS, Daugherty A
β-Aminopropionitrile Induces Distinct Pathologies in the Ascending and Descending Thoracic Aortic Regions of Mice.
Arterioscler Thromb Vasc Biol: 2024 May 23;
[PubMed:38779856] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Khanam M, Jahan NA
Determinants of Full Vaccination Coverage among Children Aged 12-23 Months in Bangladesh: A Comparison between High- and Low-Performing Divisions.
Int J Pediatr: 2024, 2024;7787593
[PubMed:38779618] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Oakes RA, Peschel L, Barraclough NE
Inter-subject correlation of audience facial expressions predicts audience engagement during theatrical performances.
iScience: 2024 Jun 21, 27(6);109843
[PubMed:38779478] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Morgan KA, Putnam M, Espin-Tello SM, Keglovits M, Campbell M, Yan Y, Wehmeier A, Stark S
Aging with long-term physical disability: Cohort analysis of survey sample in the U.S.
F1000Res: 2022, 11;68
[PubMed:38779460] [WorldCat.org: ISSN ESSN ] [DOI] ( )

McCoy K, Class MM, Ricles V, Wagoner G, Cross D, Trautz A, Krakowski AC
Kids These Days: Social Media's Influence on Adolescent Behaviors.
J Clin Aesthet Dermatol: 2024 May, 17(5);40-42
[PubMed:38779370] [WorldCat.org: ISSN ESSN ] ( p)

Gabay M, Stern I, Gruzdev N, Cohen A, Adriana-Lifshits L, Ansbacher T, Yadid I, Gal M
Engineering of methionine-auxotroph Escherichia coli via parallel evolution of two enzymes from Corynebacterium glutamicum's direct-sulfurylation pathway enables its recovery in minimal medium.
Metab Eng Commun: 2024 Jun, 18;e00236
[PubMed:38779352] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Uppinakudru AP, Casado C, Reynolds K, Stanley S, Pablos C, Marugán J
Comparison of radiant intensity in aqueous media using experimental and numerical simulation techniques.
Open Res Eur: 2024, 4;18
[PubMed:38779341] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lane Starr NM, Al-Rayyan N, Smith JM, Sandstrom S, Swaney MH, Salamzade R, Steidl O, Kalan LR, Singh AM
Combined metagenomic- and culture-based approaches to investigate bacterial strain-level associations with medication-controlled mild-moderate atopic dermatitis.
J Allergy Clin Immunol Glob: 2024 Aug, 3(3);100259
[PubMed:38779310] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Anandpara G, Kharadi A, Vidja P, Chauhan Y, Mahajan S, Patel J
A Comprehensive Review on Digital Detox: A Newer Health and Wellness Trend in the Current Era.
Cureus: 2024 Apr, 16(4);e58719
[PubMed:38779255] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Martel C, Mosleh M, Yang Q, Zaman T, Rand DG
Blocking of counter-partisan accounts drives political assortment on Twitter.
PNAS Nexus: 2024 May, 3(5);pgae161
[PubMed:38779113] [WorldCat.org: ISSN ESSN ] [DOI] ( )

McLean E, Dube A, Kalobekamo F, Slaymaker E, Crampin AC, Sear R
Local and long-distance migration among young people in rural Malawi: importance of age, sex and family.
Wellcome Open Res: 2023, 8;211
[PubMed:38779043] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Guo S, Xu J, Wang M, Akezhuoli H, Zhou X, Lu J
The effects of parent-child separation on the digital literacy of children and adolescents: A bidirectional perspective study.
Heliyon: 2024 May 30, 10(10);e31113
[PubMed:38778964] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bahadir O, Dundar C
The impact of online health information source preference on intolerance to uncertainty and cyberchondria in a youthful generation.
Indian J Psychiatry: 2024 Apr, 66(4);360-366
[PubMed:38778859] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Gupta S, Kumar A, Kathiresan P, Pakhre A, Pal A, Singh V
Mental health stigma and its relationship with mental health professionals - A narrative review and practice implications.
Indian J Psychiatry: 2024 Apr, 66(4);336-346
[PubMed:38778855] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Madan R, Das N, Patley R, Nagpal N, Malik Y, Math SB
Consequences of medical negligence and litigations on health care providers - A narrative review.
Indian J Psychiatry: 2024 Apr, 66(4);317-325
[PubMed:38778854] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Wahyuningroem SL, Sirait R, Uljanatunnisa U, Heryadi D
Youth political participation and digital movement in Indonesia: the case of #ReformasiDikorupsi and #TolakOmnibusLaw.
F1000Res: 2023, 12;543
[PubMed:38778806] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Han SM, Kwon SY, In JH, Joo JD
Enhancing ketamine anesthesia with midazolam and fentanyl for children's ear surgery: a prospective randomized study.
J Yeungnam Med Sci: 2024 May 23;
[PubMed:38778719] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mari M, Lanthier C, Proj M, Donckele EJ, Josa-Culleré L, Goncharenko K, Leroy S, Matagne B, McKenna SM, Borsari C
Boosting the Impact of EFMC Young Scientists Network Through the Creation of Working Groups.
ChemMedChem: 2024 May 22;e202400134
[PubMed:38778632] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Boyd CP, Jamieson J, Gibson K, Duffy M, Williamson M, Parr H
Eco-anxiety among regional Australian youth with mental health problems: A qualitative study.
Early Interv Psychiatry: 2024 May 22;
[PubMed:38778585] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wright PJ
Improving Mental Health Among Communication and Media Scholars: Four Structural Suggestions.
Health Commun: 2024 May 22;1-4
[PubMed:38778577] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Matthes J, Binder A, Naderer B, Forrai M, Spielvogel I, Knupfer H, Saumer M
Effects of Food Depictions in Entertainment Media on Children's Unhealthy Food Preferences: Content Analysis Linked With Panel Data.
JMIR Pediatr Parent: 2024 May 22, 7;e51429
[PubMed:38778523] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Oh HS, Chung CR, Park CM, Suh GY, Ko RE
Epinephrine induced lactic acidosis during the management of anaphylactic shock: a case report.
Clin Exp Emerg Med: 2024 May 23;
[PubMed:38778486] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Dobbs PD, Schisler ED, McCormick C
#Discreetshipping: Selling E-cigarettes on TikTok.
Nicotine Tob Res: 2024 May 23;
[PubMed:38778482] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Vazakidou P, Evangelista S, Li T, Lecante LL, Rosenberg K, Koekkoek J, Salumets A, Velthut-Meikas A, Damdimopoulou P, Mazaud-Guittot S, Fowler PA, Leonards PEG, van Duursen MBM
The profile of steroid hormones in human fetal and adult ovaries.
Reprod Biol Endocrinol: 2024 May 22, 22(1);60
[PubMed:38778396] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Cavuoto MG, Markusevska S, Stevens C, Reyes P, Renshaw G, Peters MDJ, Dow B, Feldman P, Gilbert A, Manias E, Mortimer D, Enticott J, Cooper C, Antoniades J, Appleton B, Nakrem S, O'Brien M, Ostaszkiewicz J, Eckert M, Durston C, Brijnath B
The impact of elder abuse training on subacute health providers and older adults: study protocol for a randomized control trial.
Trials: 2024 May 22, 25(1);338
[PubMed:38778386] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yin JD, Lui JN
Factors influencing risk perception during Public Health Emergencies of International Concern (PHEIC): a scoping review.
BMC Public Health: 2024 May 22, 24(1);1372
[PubMed:38778355] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zayed SO, Abd-Rabou RYM, Abdelhameed GM, Abdelhamid Y, Khairy K, Abulnoor BA, Ibrahim SH, Khaled H
The innovation of AI-based software in oral diseases: clinical-histopathological correlation diagnostic accuracy primary study.
BMC Oral Health: 2024 May 22, 24(1);598
[PubMed:38778322] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Thomson G, Balaam MC, Tishkovskaya S
Comparing factors associated with overall satisfaction for different forms of remote breastfeeding support in the UK.
Int Breastfeed J: 2024 May 22, 19(1);36
[PubMed:38778298] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Sarbazi E, Masoudi N, Mehri A, Esfanjani RM, Azizi H, Soleimanpour M, Pouraghaei M, Soleimanpour H
Trust in primary health care and COVID-19 vaccine uptake among Iranian pediatric: a web-based cross-sectional survey.
BMC Pediatr: 2024 May 22, 24(1);356
[PubMed:38778272] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Suzawa T, Iwama R, Fukuda R, Horiuchi H
Phosphatidylcholine levels regulate hyphal elongation and differentiation in the filamentous fungus Aspergillus oryzae.
Sci Rep: 2024 May 22, 14(1);11729
[PubMed:38778216] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Okopie T, Calderon-Mora J, Shokar N, Molokwu J
Effect of a Theory-Based Narrative Video on Colorectal Cancer Screening Intention, Knowledge, and Psychosocial Variables Among a Predominantly Hispanic Population.
J Cancer Educ: 2024 May 22;
[PubMed:38777997] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jalilivand S, Izadirad M, Vazifeh Shiran N, Gharehbaghian A, Naserian S
The effect of bone marrow mesenchymal stromal cell exosomes on acute myeloid leukemia's biological functions: a focus on the potential role of LncRNAs.
Clin Exp Med: 2024 May 22, 24(1);108
[PubMed:38777995] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Arab K, Qasim SS, Abu Alqam R, Mortada H
Ethical Considerations and Outcomes in Body Contouring Surgeries Among Adolescents: A Comprehensive Narrative Review.
Aesthetic Plast Surg: 2024 May 22;
[PubMed:38777927] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Munetomo K, Tomita K, Iguchi T, Matsui Y, Uka M, Hiraki T
Mimicking Cryoprobe Fracture During Renal Cryoablation Due to Contrast Media Concentration: A Case Report with Verification.
Cardiovasc Intervent Radiol: 2024 May 22;
[PubMed:38777915] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ghazal P, Akbar S
The psychological impact of the rise in media reporting of sexual violence after COVID-19 pandemic on Pakistani women's mental health.
Soc Psychiatry Psychiatr Epidemiol: 2024 May 22;
[PubMed:38777901] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Orlowski A, Forshaw R, Humphreys H, Ashton R, Cornelius V, Pickles J, Snowden S, Bottle A
Exploration of understanding of impactibility analysis and application through workshops to inform model design for population health management policy: a qualitative assessment.
BMJ Open: 2024 May 22, 14(5);e067541
[PubMed:38777591] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Siddiq MAB, Liu X, Fedorova T, Bracken K, Virk S, Venkatesha V, Farivar A, Oo WM, Linklater J, Hill DC, Hunter DJ
Efficacy and safety of pentosan polysulfate sodium in people with symptomatic knee osteoarthritis and dyslipidaemia: protocol of the MaRVeL trial.
BMJ Open: 2024 May 22, 14(5);e083046
[PubMed:38777590] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Henke-Ciążyńska K, Fober I, Munblit D, Fabbri A, Grundy Q, Bero L, Boyle RJ, Helfer B
Cross-sectional examination of commercial milk formula industry funding of international, regional and national healthcare professional associations: protocol.
BMJ Open: 2024 May 22, 14(5);e083216
[PubMed:38777586] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kim JY, Partridge SC
Non-contrast Breast MR Imaging.
Radiol Clin North Am: 2024 Jul, 62(4);661-678
[PubMed:38777541] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Mann RM, Longo V
Contrast-enhanced Mammography versus MR Imaging of the Breast.
Radiol Clin North Am: 2024 Jul, 62(4);643-659
[PubMed:38777540] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Chikarmane SA, Smith S
Background Parenchymal Enhancement: A Comprehensive Update.
Radiol Clin North Am: 2024 Jul, 62(4);607-617
[PubMed:38777537] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Chivers DJ
Media attention can impede positive predictive value of clinical diagnosis of low prevalence disease.
BMJ: 2024 May 22, 385;q1133
[PubMed:38777350] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Corazzelli G, Maria M, Cioffi V, Di Colandrea S, Fiorelli A, de Falco R, Bocchetti A
Giant thoracic meningocele: A multidisciplinary surgical approach with innovative exclusion technique.
World Neurosurg: 2024 May 20;
[PubMed:38777317] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Grass DM, Malek G, Taïeb HM, Ittah E, Richard H, Reznikov N, Laverty S
Characterization and quantification of in-vitro equine bone resorption in 3D using μCT and deep learning-aided feature segmentation.
Bone: 2024 May 20;117131
[PubMed:38777311] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Morrow EA, Robinson K, Capers W, Camel SP
Chronic Kidney Disease Risk Awareness and Dietary Intake, and Food Security Among Black Male College Students.
J Ren Nutr: 2024 May 20;
[PubMed:38777306] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Makkeyah F, Elsahn NA, Bakr MM, Al Ankily M
Effect of Acidic Media on Surface Topography and Color Stability of Two Different Glass Ceramics.
Eur J Dent: 2024 May 22;
[PubMed:38776980] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

He P, Chen Y, Lin L, Guo H, Yang F
A "turn-on" fluorescent sensor for herbicide quizalofop-p-ethyl based on cyanostilbene-pyridine macrocycle.
Talanta: 2024 May 18, 276;126269
[PubMed:38776773] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sarigiovannis P, Foster NE, Jowett S, Saunders B
Agreeing priority categories and items for inclusion in a future best practice delegation framework for musculoskeletal outpatient physiotherapy services: A consensus groups study.
Musculoskelet Sci Pract: 2024 May 18, 72;102977
[PubMed:38776763] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang D, Yao W, Jiang T, Zhou W, Lin L, Chen X
An invisible, robust copyright protection method for DNN-generated content.
Neural Netw: 2024 May 14, 177;106391
[PubMed:38776759] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Omes C, Conti A, Benedetti L, Tomasoni V, De Marchi D, Nappi RE, Cusella De Angelis MG, Ceccarelli G
Expression of miRNA from spent pre-implantation embryos culture media.
Reprod Biol: 2024 May 21, 24(2);100847
[PubMed:38776743] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Astacio JD, Melgarejo P, De Cal A, Espeso EA
Monilinia fructicola genes involved in the cell wall-degrading process in early nectarine infection.
Int J Food Microbiol: 2024 May 19, 419;110750
[PubMed:38776709] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Blua F, Boccalon M, Rolando B, Napolitano R, Arena F, Blasi F, Bertinaria M
Exploring flavylium-based SWIR emitters: Design, synthesis and optical characterization of dyes derivatized with polar moieties.
Bioorg Chem: 2024 May 17, 148;107462
[PubMed:38776650] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gao C, Wang F, Danovitch JH
Can touchscreens replace teachers? Chinese children's character learning from a touchscreen-based app, video, or face-to-face instruction.
J Exp Child Psychol: 2024 May 21, 244;105961
[PubMed:38776633] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nikhab A, Morbey R, Todkill D, Elliot AJ
Using a novel 'difference-in-differences' method and syndromic surveillance to estimate the change in local healthcare utilisation during periods of media reporting in the early stages of the COVID-19 pandemic in England.
Public Health: 2024 May 21, 232;132-137
[PubMed:38776588] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Richardson E, Beath A, Boag S
The Development of the Attachment Defenses Questionnaire (ADQ-50): A Preliminary Examination of Reliability, Validity, and Factor Structure.
J Pers Assess: 2024 May 22;1-15
[PubMed:38776445] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Herrera-Arcos G, Song H, Yeon SH, Ghenand O, Gutierrez-Arango S, Sinha S, Herr H
Closed-loop optogenetic neuromodulation enables high-fidelity fatigue-resistant muscle control.
Sci Robot: 2024 May 22, 9(90);eadi8995
[PubMed:38776378] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Froud K, Levinson L, Maddox C, Smith P
Middle-schoolers' reading and lexical-semantic processing depth in response to digital and print media: An N400 study.
PLoS One: 2024, 19(5);e0290807
[PubMed:38776360] [WorldCat.org: ISSN ESSN ] [DOI] ( )

He Y, Liu Q
The excessive celebrity worship behavior questionnaire: Chinese scale development and validation.
PLoS One: 2024, 19(5);e0303683
[PubMed:38776313] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Rebalka IA, Noguchi KS, Bulyovsky KR, Badour MI, Juracic ES, Barrett K, Brahmbhatt A, Al-Khazraji B, Punthakee Z, Perry CGR, Kumbhare DA, MacDonald MJ, Hawke TJ
Targeting skeletal muscle health with exercise in people with type 1 diabetes: A protocol for HOMET1D, a prospective observational trial with matched controls.
PLoS One: 2024, 19(5);e0303448
[PubMed:38776307] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bye A, Carter B, Leightley D, Trevillion K, Liakata M, Branthonne-Foster S, Cross S, Zenasni Z, Carr E, Williamson G, Vega Viyuela A, Dutta R
Cohort profile: The Social media, smartphone use and Self-harm in Young People (3S-YP) study-A prospective, observational cohort study of young people in contact with mental health services.
PLoS One: 2024, 19(5);e0299059
[PubMed:38776261] [WorldCat.org: ISSN ESSN ] [DOI] ( )

DeVerna MR, Aiyappa R, Pacheco D, Bryden J, Menczer F
Identifying and characterizing superspreaders of low-credibility content on Twitter.
PLoS One: 2024, 19(5);e0302201
[PubMed:38776260] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Díaz-Soto JA, Mussali-Galante P, Castrejón-Godínez ML, Saldarriaga-Noreña HA, Tovar-Sánchez E, Rodríguez A
Glyphosate resistance and biodegradation by Burkholderia cenocepacia CEIB S5-2.
Environ Sci Pollut Res Int: 2024 May 22;
[PubMed:38776026] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Marchetti A, Kupka D, Senatore VG, Bártová Z, Branduardi P, Hagarová L, Hredzák S, Lotti M
Iron bioleaching and polymers accumulation by an extreme acidophilic bacterium.
Arch Microbiol: 2024 May 22, 206(6);275
[PubMed:38775940] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Li M, Shu W, Zou Y, Xiao H, Asihaer Y, Guan M, Khattab N, Thapa B, Sapkota S, Vermund SH, Huang D, Hu Y
Reversing Metabolic Dysfunction-Associated Steatotic Liver Disease Promotes Healthy Pediatric Cardiovascular Structures: The PROC Study.
Am J Gastroenterol: 2024 May 7;
[PubMed:38775939] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gonzalez S, Mora Hurtado AC, Syder NC, Rodman J, Elbuluk N
Perception of skin cancer risk and sun protective practices in individuals with vitiligo: a prospective international cross-sectional survey.
Arch Dermatol Res: 2024 May 22, 316(5);189
[PubMed:38775848] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Maduneme E
Some Slice of Climate Anxiety … Is Good: A Cross-Sectional Survey Exploring the Relationship Between College Students Media Exposure and Perceptions About Climate Change.
J Health Commun: 2024 May 22;1-12
[PubMed:38775847] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hafez MH
Road To Deceased Donor Transplantation in Egypt.
Exp Clin Transplant: 2024 Apr, 22(Suppl 4);33-36
[PubMed:38775695] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Barbari A
Why Altruistic Organ Donations Are Not Meeting Demands.
Exp Clin Transplant: 2024 Apr, 22(Suppl 4);12-24
[PubMed:38775692] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Vogel EA, Ranker LR, Harrell PT, Hart JL, Kong G, McIntosh S, Meissner HI, Ozga JE, Romer D, Stanton CA
Characteristics of Adolescents' and Young Adults' Exposure to and Engagement with Nicotine and Tobacco Product Content on Social Media.
J Health Commun: 2024 May 22;1-11
[PubMed:38775659] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Song K, Yang D, Zhou C, Li Q, Zhang L, Gong J, Zhong W, Shen S, Chen S
CoPS/Co 4 S 3 Heterojunction with Highly Exposed Active Sites and Dual-site Synergy for Effective Hydrogen Evolution Reactions.
Chemistry: 2024 May 22;e202401038
[PubMed:38775655] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Genesis G, Gomes IF, Barbosa JA, Araújo AFL, Ramos GMS
Machine learning-based classification of petrofacies in fine laminated limestones.
An Acad Bras Cienc: 2024, 96(1);e20230041
[PubMed:38775568] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Damázio LS, Frutuoso EB, Zilli JPS, Ivanov YA, Cancillier SG, Quevedo J, Zugno AI
Eating Disorder Risks Associated with Time Spent Using Social Media at an AMREC Population in the Coal Mining Region of Santa Catarina.
An Acad Bras Cienc: 2024, 96(2);e20230367
[PubMed:38775553] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hasan H, Peng W, Wijayarathna R, Wahle E, Fietz D, Bhushan S, Pleuger C, Planinić A, Günther S, Loveland KL, Pilatz A, Ježek D, Schuppe HC, Meinhardt A, Hedger MP, Fijak M
Monocytes expressing activin A and CCR2 exacerbate chronic testicular inflammation by promoting immune cell infiltration.
Hum Reprod: 2024 May 22;
[PubMed:38775335] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hosseini PS, Anarkooli IJ, Abdanipour A, Arianmanesh M
The effect of coenzyme Q10 on cryotolerance of in vivo-derived mouse embryos.
JBRA Assist Reprod: 2024 Jun 1, 28(2);276-283
[PubMed:38775323] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Simões BES, Muniz MRR, Araujo TD, Magalhães Carneiro E, Simionato AVC
Evaluation of tauroursodeoxycholic acid in liver cells' cultures by MEKC: Initial hints to comprehend its role in diabetes mellitus of obese individuals.
Electrophoresis: 2024 May 22;
[PubMed:38775263] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gow ML, Henderson M, Henry A, Roberts L, Roth H
Australian postpartum women want reputable health information delivered via social networking sites.
Aust N Z J Obstet Gynaecol: 2024 May 22;
[PubMed:38775187] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Konstantinov IE, Moscoso B, Fricke TA, Zubritskiy A, Lijanto RM
Arterial switch operation in a child with commissural malalignment and unusual coronary anatomy.
Multimed Man Cardiothorac Surg: 2024 May 22, 2024;
[PubMed:38775126] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Choi MY, Foster EA, Lee HS, Park S
Exploring the Relationship Between Avatar Ego Types and Communication: A Comparative Study of South Korea and the United States Based on the Expectation Confirmation Model.
Cyberpsychol Behav Soc Netw: 2024 May 22;
[PubMed:38775037] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Link KG, Guy RD, Thomases B, Arratia PE
Effect of fluid elasticity on the emergence of oscillations in an active elastic filament.
J R Soc Interface: 2024 May, 21(214);20240046
[PubMed:38774961] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

He T, You M, Zhu H, Chen P, Fang S
CCCTC-binding factor suppresses alpha-2-macroglobulin transcription to improve vascular endothelial cell functions in lower extremity arteriosclerosis obliterans.
Gen Physiol Biophys: 2024 May, 43(3);231-242
[PubMed:38774923] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Miller HK, Branan M, Priestley RA, Álvarez-Alonso R, Cherry C, Smith C, Urie NJ, Wiedenheft A, Bliss C, Marshall K, Kersh GJ
Coxiella burnetii in domestic doe goats in the United States, 2019-2020.
Front Vet Sci: 2024, 11;1393296
[PubMed:38774910] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Nikmahzar A, Khadivi F, Koruji M, Jahanshahi M, Dehghan Tarazjani M, Shabani M, Abbasi Y, Abbasi M
Evaluation of Apoptosis-related Genes and Hormone Secretion Profiles Using Three Dimensional Culture System of Human Testicular Organoids.
Galen Med J: 2023, 12;1-13
[PubMed:38774852] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yang A, Wang J, Yang Z, Wang L, Li H, Lei L
Hypoxic dental pulp stem cells-released succinate promotes osteoclastogenesis and root resorption.
Int J Med Sci: 2024, 21(6);1155-1164
[PubMed:38774749] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Efficace F, Buckstein R, Abel GA, Giesinger JM, Fenaux P, Bewersdorf JP, Brunner AM, Bejar R, Borate U, DeZern AE, Greenberg P, Roboz GJ, Savona MR, Sparano F, Boultwood J, Komrokji R, Sallman DA, Xie Z, Sanz G, Carraway HE, Taylor J, Nimer SD, Della Porta MG, Santini V, Stahl M, Platzbecker U, Sekeres MA, Zeidan AM
Toward a more patient-centered drug development process in clinical trials for patients with myelodysplastic syndromes/neoplasms (MDS): Practical considerations from the International Consortium for MDS (icMDS).
Hemasphere: 2024 May, 8(5);e69
[PubMed:38774655] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Malik B, Kaur M, Singh K, Kaur J, Saxena A, Sohal HS, Husain FM, Arshad M, Adil M
An environmentally sustainable approach for the utilization of Erigeron bonariensis as a green inhibitor against weathering steel corrosion in acidic media.
RSC Adv: 2024 May 15, 14(23);16432-16444
[PubMed:38774612] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Rusdy H, Damanik DH
Antibacterial activity of Betadine ( Jatropha multifida L.) stem extract on Pseudomonas aeruginosa growth invitro.
F1000Res: 2022, 11;1222
[PubMed:38774575] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ulloa R, Richter AC, Makhortykh M, Urman A, Kacperski CS
Representativeness and face-ism: Gender bias in image search.
New Media Soc: 2024 Jun, 26(6);3541-3567
[PubMed:38774557] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Rikitianskaia M
"The real ethernet": The transnational history of global Wi-Fi connectivity.
New Media Soc: 2024 Jun, 26(6);3568-3587
[PubMed:38774556] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

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Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
[PubMed:15606968] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
[PubMed:12689096] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
[PubMed:12134151] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

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1. Kutalik2008NB pmid=18464786 // PDF
2. Ihmels2004 pmid=15606968 // PDF
3. Ihmels2004a pmid=15044247 // PDF
4. Bergmann2004 pmid=14737187 // PDF
5. Bergmann2003 pmid=12689096 //PDF
6. Ihmels2002 pmid=12134151 // PDF

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