Difference between revisions of "UNIL BSc course: Bioinformatics for Genomics 2023"

(Created page with "This course is for third year B.Sc. students and part of the "Genes and Genome evolution" (GGE) module. * Course aims: ** Get to know some key bioinformatics methods necessar...")
 
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*** 8:15-10:00 Lecture (Sven)
 
*** 8:15-10:00 Lecture (Sven)
 
*** 10:15-12:00 Tutorial (Lead: Olga, Support: Michael, Sven)
 
*** 10:15-12:00 Tutorial (Lead: Olga, Support: Michael, Sven)
 
 
** 5 April 2023: "Advanced analysis of genome-wide gene expression"
 
** 5 April 2023: "Advanced analysis of genome-wide gene expression"
 
*** 8:15-10:00 Lecture (Sven)
 
*** 8:15-10:00 Lecture (Sven)
 
*** 10:15-12:00 Tutorial (Lead: Michael, Support: Olga, Sven)
 
*** 10:15-12:00 Tutorial (Lead: Michael, Support: Olga, Sven)
 
 
** 19 April 2023: "Measuring and visualising genome-wide epigenetic profiles"
 
** 19 April 2023: "Measuring and visualising genome-wide epigenetic profiles"
 
*** 8:15-10:00 Lecture (Sven)
 
*** 8:15-10:00 Lecture (Sven)
 
*** 10:15-12:00 Tutorial (Lead: Anneke, Support: Daniel, Sven)
 
*** 10:15-12:00 Tutorial (Lead: Anneke, Support: Daniel, Sven)
 
 
** 26 April 2023: "Measuring and visualising genome-wide chromatin contacts"
 
** 26 April 2023: "Measuring and visualising genome-wide chromatin contacts"
 
*** 8:15-10:00 Lecture (Sven)
 
*** 8:15-10:00 Lecture (Sven)
 
*** 10:15-12:00 Tutorial (Lead: Daniel, Support: Sofia, Sven)
 
*** 10:15-12:00 Tutorial (Lead: Daniel, Support: Sofia, Sven)
 
 
** 27 April 2023: "Defining and visualising gene networks"
 
** 27 April 2023: "Defining and visualising gene networks"
 
*** 14:15-16:00 Lecture (Sven)
 
*** 14:15-16:00 Lecture (Sven)
 
*** 16:15-18:00 Tutorial (Lead: Sofia, Support: Anneke, Sven)
 
*** 16:15-18:00 Tutorial (Lead: Sofia, Support: Anneke, Sven)
 
  
 
We will hand out simple bioinformatics exercises based on the tutorials. Students should work on these exercise until April 14 on which day we will do a 4h "Flipped classroom" where they can discuss these exercise with tutors.   
 
We will hand out simple bioinformatics exercises based on the tutorials. Students should work on these exercise until April 14 on which day we will do a 4h "Flipped classroom" where they can discuss these exercise with tutors.   

Revision as of 19:45, 21 March 2023

This course is for third year B.Sc. students and part of the "Genes and Genome evolution" (GGE) module.

  • Course aims:
    • Get to know some key bioinformatics methods necessary for genomic analysis
    • Apply these methods within a few selected cases, focusing on data-visualisation typically trying to reproduce selected figures that where discussed in other GGE courses
    • Develop an understanding of potential pitfalls and the impact of bioinformatics choices in genomic results
  • Prerequisites:
    • Notions of genomics (gene, genome, transcriptome)
    • Basic statistics (what is a test, a p-value)
    • Basic literacy in R and/or Python.
  • Schedule
    • 29 March 2023: "Measuring and visualising genome-wide gene expression"
      • 8:15-10:00 Lecture (Sven)
      • 10:15-12:00 Tutorial (Lead: Olga, Support: Michael, Sven)
    • 5 April 2023: "Advanced analysis of genome-wide gene expression"
      • 8:15-10:00 Lecture (Sven)
      • 10:15-12:00 Tutorial (Lead: Michael, Support: Olga, Sven)
    • 19 April 2023: "Measuring and visualising genome-wide epigenetic profiles"
      • 8:15-10:00 Lecture (Sven)
      • 10:15-12:00 Tutorial (Lead: Anneke, Support: Daniel, Sven)
    • 26 April 2023: "Measuring and visualising genome-wide chromatin contacts"
      • 8:15-10:00 Lecture (Sven)
      • 10:15-12:00 Tutorial (Lead: Daniel, Support: Sofia, Sven)
    • 27 April 2023: "Defining and visualising gene networks"
      • 14:15-16:00 Lecture (Sven)
      • 16:15-18:00 Tutorial (Lead: Sofia, Support: Anneke, Sven)

We will hand out simple bioinformatics exercises based on the tutorials. Students should work on these exercise until April 14 on which day we will do a 4h "Flipped classroom" where they can discuss these exercise with tutors.

  • Lecture presentations:
    • TBA
  • Exercise material:
    • TBA