Difference between revisions of "UNIL BSc course: Bioinformatics for Genomics 2023"
(Created page with "This course is for third year B.Sc. students and part of the "Genes and Genome evolution" (GGE) module. * Course aims: ** Get to know some key bioinformatics methods necessar...") |
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*** 8:15-10:00 Lecture (Sven) | *** 8:15-10:00 Lecture (Sven) | ||
*** 10:15-12:00 Tutorial (Lead: Olga, Support: Michael, Sven) | *** 10:15-12:00 Tutorial (Lead: Olga, Support: Michael, Sven) | ||
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** 5 April 2023: "Advanced analysis of genome-wide gene expression" | ** 5 April 2023: "Advanced analysis of genome-wide gene expression" | ||
*** 8:15-10:00 Lecture (Sven) | *** 8:15-10:00 Lecture (Sven) | ||
*** 10:15-12:00 Tutorial (Lead: Michael, Support: Olga, Sven) | *** 10:15-12:00 Tutorial (Lead: Michael, Support: Olga, Sven) | ||
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** 19 April 2023: "Measuring and visualising genome-wide epigenetic profiles" | ** 19 April 2023: "Measuring and visualising genome-wide epigenetic profiles" | ||
*** 8:15-10:00 Lecture (Sven) | *** 8:15-10:00 Lecture (Sven) | ||
*** 10:15-12:00 Tutorial (Lead: Anneke, Support: Daniel, Sven) | *** 10:15-12:00 Tutorial (Lead: Anneke, Support: Daniel, Sven) | ||
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** 26 April 2023: "Measuring and visualising genome-wide chromatin contacts" | ** 26 April 2023: "Measuring and visualising genome-wide chromatin contacts" | ||
*** 8:15-10:00 Lecture (Sven) | *** 8:15-10:00 Lecture (Sven) | ||
*** 10:15-12:00 Tutorial (Lead: Daniel, Support: Sofia, Sven) | *** 10:15-12:00 Tutorial (Lead: Daniel, Support: Sofia, Sven) | ||
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** 27 April 2023: "Defining and visualising gene networks" | ** 27 April 2023: "Defining and visualising gene networks" | ||
*** 14:15-16:00 Lecture (Sven) | *** 14:15-16:00 Lecture (Sven) | ||
*** 16:15-18:00 Tutorial (Lead: Sofia, Support: Anneke, Sven) | *** 16:15-18:00 Tutorial (Lead: Sofia, Support: Anneke, Sven) | ||
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We will hand out simple bioinformatics exercises based on the tutorials. Students should work on these exercise until April 14 on which day we will do a 4h "Flipped classroom" where they can discuss these exercise with tutors. | We will hand out simple bioinformatics exercises based on the tutorials. Students should work on these exercise until April 14 on which day we will do a 4h "Flipped classroom" where they can discuss these exercise with tutors. |
Revision as of 19:45, 21 March 2023
This course is for third year B.Sc. students and part of the "Genes and Genome evolution" (GGE) module.
- Course aims:
- Get to know some key bioinformatics methods necessary for genomic analysis
- Apply these methods within a few selected cases, focusing on data-visualisation typically trying to reproduce selected figures that where discussed in other GGE courses
- Develop an understanding of potential pitfalls and the impact of bioinformatics choices in genomic results
- Prerequisites:
- Notions of genomics (gene, genome, transcriptome)
- Basic statistics (what is a test, a p-value)
- Basic literacy in R and/or Python.
- Teacher: Sven Bergmann
- Schedule
- 29 March 2023: "Measuring and visualising genome-wide gene expression"
- 8:15-10:00 Lecture (Sven)
- 10:15-12:00 Tutorial (Lead: Olga, Support: Michael, Sven)
- 5 April 2023: "Advanced analysis of genome-wide gene expression"
- 8:15-10:00 Lecture (Sven)
- 10:15-12:00 Tutorial (Lead: Michael, Support: Olga, Sven)
- 19 April 2023: "Measuring and visualising genome-wide epigenetic profiles"
- 8:15-10:00 Lecture (Sven)
- 10:15-12:00 Tutorial (Lead: Anneke, Support: Daniel, Sven)
- 26 April 2023: "Measuring and visualising genome-wide chromatin contacts"
- 8:15-10:00 Lecture (Sven)
- 10:15-12:00 Tutorial (Lead: Daniel, Support: Sofia, Sven)
- 27 April 2023: "Defining and visualising gene networks"
- 14:15-16:00 Lecture (Sven)
- 16:15-18:00 Tutorial (Lead: Sofia, Support: Anneke, Sven)
- 29 March 2023: "Measuring and visualising genome-wide gene expression"
We will hand out simple bioinformatics exercises based on the tutorials. Students should work on these exercise until April 14 on which day we will do a 4h "Flipped classroom" where they can discuss these exercise with tutors.
- Lecture presentations:
- TBA
- Exercise material:
- TBA