ISA

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An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Yuan SH, Wu CC, Wang YC, Chan XY, Chu HW, Yang Y, Liu HP
AGR2-mediated unconventional secretion of 14-3-3ε and α-actinin-4, responsive to ER stress and autophagy, drives chemotaxis in canine mammary tumor cells.
Cell Mol Biol Lett: 2024 May 31, 29(1);84
[PubMed:38822246] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Argüelles-Moyao A, Ángeles-Argáiz R, Garibay-Orijel R, Pacheco-Aguilar JR
Isolation and Enzymatic Characterization of Fungal Strains from Grapevines with Grapevine Trunk Diseases Symptoms in Central Mexico.
Curr Microbiol: 2024 May 31, 81(7);200
[PubMed:38822158] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Schwaller F
What is science? Tech heavyweights brawl over definition.
Nature: 2024 May 31;
[PubMed:38822105] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fu J, Hsiao CA
Decoding intelligence via symmetry and asymmetry.
Sci Rep: 2024 May 31, 14(1);12525
[PubMed:38822016] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Obeidnejad E, Kavoosi G, Saharkhiz MJ
Antioxidant, anti-amylase, anti-lipase, and efficiency of Satureja fatty acid on the anti-inflammatory parameters in lipopolysaccharide-stimulated macrophage through Nrf2/NF-kB/NADH oxidase pathway.
Sci Rep: 2024 May 31, 14(1);12490
[PubMed:38821994] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mao X, Gu H, Kim D, Kimura Y, Wang N, Xu E, Kumbhar R, Ming X, Wang H, Chen C, Zhang S, Jia C, Liu Y, Bian H, Karuppagounder SS, Akkentli F, Chen Q, Jia L, Hwang H, Lee SH, Ke X, Chang M, Li A, Yang J, Rastegar C, Sriparna M, Ge P, Brahmachari S, Kim S, Zhang S, Shimoda Y, Saar M, Liu H, Kweon SH, Ying M, Workman CJ, Vignali DAA, Muller UC, Liu C, Ko HS, Dawson VL, Dawson TM
Aplp1 interacts with Lag3 to facilitate transmission of pathologic α-synuclein.
Nat Commun: 2024 May 31, 15(1);4663
[PubMed:38821932] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Agostoni C, Boccia S, Graffigna G, Slavin J, Abodi M, Szajewska H
What should I eat today? Evidence, guidelines, dietary patterns and consumer's behavior.
Eur J Intern Med: 2024 May 30;
[PubMed:38821785] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tsujimoto M, Moon S, Ito Y
Effect of conditioned media on the angiogenic activity of mesenchymal stem cells.
J Biosci Bioeng: 2024 May 30;
[PubMed:38821758] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wu C, Huang F, Wei L, Yi S, Wu Y, Huang Z, Yi M, Li F
Do the residual metals in multiple environmental media surrounding mines pose ecological and health risks? A case of an abandoned mining area in central south China.
Environ Res: 2024 May 29;119279
[PubMed:38821461] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Awathare P, Hait S, Gawali S, Nayak M, Kumar NR, Guldhe A
Developing biomass augmentation strategy for cultivation of Marvania coccoides using fruit waste and wastewater based growth medium for biodiesel production.
Bioresour Technol: 2024 May 29;130911
[PubMed:38821425] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kim M, Kim J, Chang C, Jung Y
Resubmission Addressing the "Hook In" Problem in Accero Stent-assisted Coil Embolization: Understanding Cases and Solutions.
World Neurosurg: 2024 May 29;
[PubMed:38821402] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rodríguez-Sanz A, Fuciños C, Soares C, Torrado AM, Lima N, Rúa ML
A comprehensive method for the sequential separation of extracellular xylanases and β-xylosidases/arabinofuranosidases from a new Fusarium species.
Int J Biol Macromol: 2024 May 29;132722
[PubMed:38821304] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Villanueva-Blasco VJ, Eslava D, Olave L, Torrens M
Electronic interventions in primary care to address substance use: A systematic review.
Addict Behav: 2024 May 23, 156;108073
[PubMed:38821009] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Shi Y, Stanmore E, McGarrigle L, Wang X, Wang X, Li Y, Todd C
Development of a community intervention combining social media-based health education plus exercise programme (SHEEP) to improve muscle function among young-old adults with possible sarcopenia: Co-design approach.
Maturitas: 2024 May 24, 186;108027
[PubMed:38820935] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fu J, Zhang S, Ji L, Xu X, Jiao W, Chen T, Li X, Zhan M
State of the art in self-sustaining smoldering for remediation of contaminated soil and disposal of organic waste.
J Hazard Mater: 2024 May 21, 474;134667
[PubMed:38820755] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Song G, Wu H, Wang X, Li S, Liang R, Zhou M
Regulating the electronic structure by P-doping cobalt-based catalyst for atomic hydrogen mediated electrocatalytic dechlorination.
J Hazard Mater: 2024 May 28, 474;134750
[PubMed:38820752] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Luo C, Hou Y, Ye W, Tang Y, He D, Xiao L, Qiu Y
Algae polysaccharide-induced transport transformation of nanoplastics in seawater-saturated porous media.
Water Res: 2024 May 20, 259;121807
[PubMed:38820728] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Vaccaro F, Passeri I, Ajijah N, Bettini P, Courty PE, Dębiec-Andrzejewska K, Joshi N, Kowalewska Ł, Stasiuk R, Musiałowski M, Pranaw K, Mengoni A
Genotype-by-genotype interkingdom cross-talk between symbiotic nitrogen fixing Sinorhizobium meliloti strains and Trichoderma species.
Microbiol Res: 2024 May 18, 285;127768
[PubMed:38820702] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Harada S, Koyama Y, Yoshioka Y, Inohara H, Shimada S
Visualization of Reissner's membrane in the mouse inner ear using highly sensitive magnetic resonance imaging analysis.
Biochem Biophys Res Commun: 2024 May 27, 723;150153
[PubMed:38820624] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

K C SP, Adhikari B, Pandey AR, Pandey M, Kakchapati S, Giri S, Sharma S, Lamichhane B, Gautam G, Joshi D, Dulal BP, Regmi S, Baral SC
Unmet need for family planning and associated factors among currently married women in Nepal: A further analysis of Nepal Demographic and Health Survey-2022.
PLoS One: 2024, 19(5);e0303634
[PubMed:38820547] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Konkor I, Bisung E, Soliku O, Ayanore M, Kuuire V
Exposure to mass media chronic health campaign messages and the uptake of non-communicable disease screening in Ghana.
PLoS One: 2024, 19(5);e0302942
[PubMed:38820497] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zhang EY, Baldwin A, Hundley C, Chang E, Auderset S, Bawendi M, Kristensen TV
Influence of an extreme event-the COVID-19 pandemic-On establishment of and data collection by a citizen science project.
PLoS One: 2024, 19(5);e0303429
[PubMed:38820440] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Nakamura K, Miyauchi K
Grazing resistance developed in Escherichia coli K-12 during coexistence with a bacterivorous protist.
PLoS One: 2024, 19(5);e0299885
[PubMed:38820415] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Guo T, Wan Z, Panahi-Sarmad M, Banvillet G, Lu Y, Zargar Ershadir S, Tian J, Jiang F, Mao Y, Tu Q, Rojas OJ
Chitin Nanofibers Enable the Colloidal Dispersion of Carbon Nanomaterials in Aqueous Phase and Hybrid Material Coassembly.
ACS Nano: 2024 May 31;
[PubMed:38820368] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tilahun M, Fiseha M, Alebachew M, Gedefie A, Ebrahim E, Tesfaye M, Belete MA, Seid A, Gebretsadik D, Alemayehu E, Demsiss W, Sharew B, Shibabaw A, Mekonnen H, Dessie T
Uro-pathogens: Multidrug resistance and associated factors of community-acquired UTI among HIV patients attending antiretroviral therapy in Dessie Comprehensive Specialized Hospital, Northeast Ethiopia.
PLoS One: 2024, 19(5);e0296480
[PubMed:38820330] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Jarab AS, Al-Qerem W, Alzoubi KH, Abu Heshmeh SR, Hayek M, Al Hamarneh YN, Aburuz S
Confidence, attitude, and practice of scientific research among health professions' students in the United Arab Emirates.
PLoS One: 2024, 19(5);e0304357
[PubMed:38820321] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Nong JC, You W, Wang YF, Xu Y, Xu T, Meng PN, Wu XQ, Wu ZM, Kong XH, Jia HB, Yin DL, Li L, Ye F
Dynamic natural components and morphological changes in nonculprit subclinical atherosclerosis in patients with acute coronary syndrome and mild chronic kidney disease at the 1-year follow-up and clinical significance at the 5-year follow-up.
PLoS One: 2024, 19(5);e0302547
[PubMed:38820294] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Jung HS, Lee H, Woo YS, Baek SY, Kim JH
Expansive data, extensive model: Investigating discussion topics around LLM through unsupervised machine learning in academic papers and news.
PLoS One: 2024, 19(5);e0304680
[PubMed:38820285] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Sakur SGJ, Williamson SL, Pavic A, Gao YK, Harris T, Kotiw M, Muir WI, Groves PJ
Developing a selective culturing approach for Campylobacter hepaticus.
PLoS One: 2024, 19(5);e0302861
[PubMed:38820282] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Tomassi A, Falegnami A, Romano E
Mapping automatic social media information disorder. The role of bots and AI in spreading misleading information in society.
PLoS One: 2024, 19(5);e0303183
[PubMed:38820281] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Dunne P, Culliney L, O'Mahony L, Byrne M, Murphy AW, O'Reilly S
Exploring health professionals' knowledge, practices and attitudes regarding gestational diabetes: A cross-sectional Irish national survey.
Diabet Med: 2024 May 31;e15373
[PubMed:38820178] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang H, Dekel DR, Abruña HD
Unraveling the Mechanism of Ammonia Electrooxidation by Coupled Differential Electrochemical Mass Spectrometry and Surface-Enhanced Infrared Absorption Spectroscopic Studies.
J Am Chem Soc: 2024 May 31;
[PubMed:38820130] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Indah N, Nilawati Usman A, Sanusi Baso Y, Syarif S, Ahmad M, Agus Mumang A
Early detection of self-breast examination using smartphone breast application.
Breast Dis: 2024, 43(1);135-144
[PubMed:38820009] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Hijrah H, Usman AN, Sanusi Baso Y, Syarif S, Ahmad M, Nulandari Z
Influence of variables on breast self-examination: Potential barrier or enhancement of breast cancer prevention.
Breast Dis: 2024, 43(1);145-155
[PubMed:38820008] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Lawal OT, Onuegbu C, Afe AE, Olopoda IA, Igbe FO, Ojo FM, Sanni DM
Biochemical characterization of purified phytase produced from Aspergillus awamori AFE1 associated with the gastrointestinal tract of longhorn beetle (Cerambycidae latreille).
Mycologia: 2024 May 31;1-10
[PubMed:38819952] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang L, Jiang S
Examining the Role of Information Behavior in Linking Cancer Risk Perception and Cancer Worry to Cancer Fatalism in China: Cross-Sectional Survey Study.
J Med Internet Res: 2024 May 31, 26;e49383
[PubMed:38819919] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Torres-Machorro A, Anaya-Ayala JE, Lopez-Mendez A, Martinez-Quesada JI, García-Alva JR, Cuen-Ojeda C, Lozano-Corona R, Luna L, Hinojosa CA
Multi-perspective ultrasound evaluation of Carotid Intima-Media thickness in hemodialysis access patients and its possible use to predict clinical outcomes.
Vascular: 2024 May 31;17085381241258554
[PubMed:38819808] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Srivastava S, Mathur G
Statistical optimization of bioprocess parameters for enhanced production of bacterial cellulose from K. saccharivorans BC-G1.
Braz J Microbiol: 2024 May 31;
[PubMed:38819773] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang Y, Xue J, Li S, Yang H, Kang C
Impact of bariatric surgery on carotid intima-media thickness and arterial stiffness in metabolically healthy obesity: a prospective study.
Hormones (Athens): 2024 May 31;
[PubMed:38819742] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Terrany A, Sanabria B, Rafiq B, Rao B
Landscape of social networking support groups for common dermatological conditions.
Arch Dermatol Res: 2024 May 31, 316(6);294
[PubMed:38819612] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hernández-Freyle C, Castilla-Acevedo SF, Harders AN, Acosta-Herazo R, Acuña-Bedoya JD, Santoso M, Torres-Ceron DA, Amaya-Roncancio S, Mueses MA, Machuca-Martínez F
Ultraviolet activation of monochloramine to treat contaminants of emerging concern: reactions, operating parameters, byproducts, and opportunities.
Environ Sci Pollut Res Int: 2024 May 31;
[PubMed:38819507] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Coetzee G, García-Aparicio MDP, Bosman CE, van Rensburg E, Görgens JF
Evaluation of different glycerol fed-batch strategies in a lab-scale bioreactor for the improved production of a novel engineered β-fructofuranosidase enzyme in Pichia pastoris.
World J Microbiol Biotechnol: 2024 May 31, 40(7);223
[PubMed:38819502] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yoshida E, Kato Y, Kanamoto A, Kondo A, Hasunuma T
Mixotrophic culture enhances fucoxanthin production in the haptophyte Pavlova gyrans.
Appl Microbiol Biotechnol: 2024 May 31, 108(1);352
[PubMed:38819468] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kihara T
Social Mobility Across the Pacific: An Analysis of Japanese Americans in the Continental United States.
Demography: 2024 May 31;
[PubMed:38819372] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gallagher AWA, Sheikh ZD, Khan Z, Aftab U, Rahim M, Ullah A, Ullah S, Ul Haq H, Siddiqi K
A systematic investigation of tobacco industry sourced data relating to illicit tobacco trade featured in Pakistan's media coverage (2015-2020).
Nicotine Tob Res: 2024 May 31;
[PubMed:38819370] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mouloud Y, Staubach S, Stambouli O, Mokhtari S, Kutzner TJ, Zwanziger D, Hemeda H, Giebel B
Calcium chloride declotted human platelet lysate promotes the expansion of mesenchymal stromal cells and allows manufacturing of immunomodulatory active extracellular vesicle products.
Cytotherapy: 2024 Apr 27;
[PubMed:38819364] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Barekzai J, Refflinghaus L, Okpara M, Tasto L, Tertel T, Giebel B, Czermak P, Salzig D
Process development for the production of mesenchymal stromal cell-derived extracellular vesicles in conventional 2D systems.
Cytotherapy: 2024 Apr 27;
[PubMed:38819363] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tayade KR, Mahajan PS, Sangtani R
Evidence-Based Study of Enlarged Adenoid Treated with Homoeopathic Medicine: A Case Report.
Altern Ther Health Med: 2024 May 31;
[PubMed:38819187] [WorldCat.org: ISSN ESSN ] ( a)

Timouma S, Balarezo-Cisneros LN, Schwartz J-M, Delneri D
Development of a genome-scale metabolic model for the lager hybrid yeast S. pastorianus to understand the evolution of metabolic pathways in industrial settings.
mSystems: 2024 May 31;e0042924
[PubMed:38819150] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

English SG, Bishop CA, Bieber M, Elliott JE
Following Regulation, Imidacloprid Persists and Flupyradifurone Increases in Nontarget Wildlife.
Environ Toxicol Chem: 2024 May 31;
[PubMed:38819074] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ross RD, Lee K, Quintana Cintrón GJ, Xu K, Sheng H, Schmidt JR, Jin S
Stable Pentagonal Layered Palladium Diselenide Enables Rapid Electrosynthesis of Hydrogen Peroxide.
J Am Chem Soc: 2024 May 31;
[PubMed:38818811] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nowak GJ, Bradshaw AS, Head KJ
Contributions and Impact of Health Communication Research to Vaccination Efforts and Acceptance.
Health Commun: 2024 May 31;1-7
[PubMed:38818795] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Moeller F, Klein J, Waldvogel SR
Selective Degradation of Technically Relevant Lignin to Vanillic Acid and Protocatechuic Acid.
ChemSusChem: 2024 May 31;e202400759
[PubMed:38818644] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tamarit L, El Ouardi M, Lence E, Andreu I, González-Bello C, Miranda MA, Vayá I
Modulation of the photobehavior of gefitinib and its phenolic metabolites by human transport proteins.
Front Pharmacol: 2024, 15;1387057
[PubMed:38818381] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Otto-Moudry R, Kinney LM, Butcher RL, Blasdel G, Brown LK, Elwyn G, Myers JB, Turco JH, Nigriny JF, Moses RA
Exploring Decisional Conflict Experienced by Individuals Considering Metoidioplasty and Phalloplasty Gender-affirming Surgery.
Plast Reconstr Surg Glob Open: 2024 May, 12(5);e5840
[PubMed:38818233] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Morshed Hemel MM, Reza MM, Mohammad Pritom GS, Sarwar G, Morshed Khan MN, Khan S, Rana AM, Khan SI
Full title- acceptability and feasibility of HIV self-testing (HIVST) among MSM and transgender women (hijra) in Bangladesh: A mixed-method study.
Heliyon: 2024 May 30, 10(10);e31477
[PubMed:38818164] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Cake S
Framing Unions and Nurses.
Work Employ Soc: 2024 Jun, 38(3);579-595
[PubMed:38818087] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Shen C, Shen Y, Huang W, Zhang A, Zou T, Guo D, Wang H, Wu J, Hu H, Xiang M, Ye B
A novel homozygous RSPH4A variant in a family with primary ciliary dyskinesia and literature review.
Front Genet: 2024, 15;1364476
[PubMed:38818043] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Papin LJ, Esche M, Scanlon JEM, Jacobsen NSJ, Debener S
Investigating cognitive-motor effects during slacklining using mobile EEG.
Front Hum Neurosci: 2024, 18;1382959
[PubMed:38818032] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Al-Obaidi MN, Al-Obaidi AD, Hashim HT, Al Sakini AS, Abd AM, Rashed RH, Saeed RO, Al Saeedi M, Al-Obaidi A, Hashim AT
Assessing breast self-examination knowledge and practices among women in Iraq: A cross-sectional study.
Health Sci Rep: 2024 Jun, 7(6);e2137
[PubMed:38817882] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kim D, Jiang T, Baek JH, Jang SH, Zhu Y
Understanding and comparing risk factors and subtypes in South Korean adult and adolescent women's suicidal ideation or suicide attempt using survey and social media data.
Digit Health: 2024 Jan-Dec, 10;20552076241255660
[PubMed:38817842] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bernardini N, Dattola A, Caldarola G, Orsini D, Assorgi C, D'Amore A, Maretti G, Richetta AG, Tolino E, Skroza N, Potenza C
Rapid response on facial psoriasis to bimekizumab: case series.
Drugs Context: 2024, 13;
[PubMed:38817804] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bautista Gómez AJ, López Orozco M, Barajas Esparza L, de La Cruz Durán H, Chehue Romero A, Bermúdez Camps IB, Téllez López AM, López Vargas LC, Valverde Merino MI, Martínez Martínez F, Reyes Hernández I
Feasibility and reliability of a quality indicator system for an ambulatory dispensing service.
Drugs Context: 2024, 13;
[PubMed:38817803] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chiloiro S, Appetecchia M, Bianchi A, Costa D, De Acetis C, Gargiulo P, Giampietro A, Isidori AM, Jaffrain-Rea ML, Passeri M, Pigliaru F, Poggi M, De Marinis L
Long-term pasireotide-LAR treatment in the personalized therapy of patients with complex acromegaly: a collection of clinical experiences.
Drugs Context: 2024, 13;
[PubMed:38817802] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Munari S, Ciotti G, Cestaro W, Corsi L, Tonin S, Ballarin A, Floriani A, Dartora C, Bosi A, Tacconi M, Gialdini F, Gottardi M, Menzella F
Severe hypereosinophilia in a patient treated with dupilumab and shift to mepolizumab: the importance of multidisciplinary management. A case report and literature review.
Drugs Context: 2024, 13;
[PubMed:38817801] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chai BS, Chae T, Huang AL
Evaluation of Educational YouTube Videos for Distal Radius Fracture Treatment.
J Hand Surg Glob Online: 2024 May, 6(3);377-382
[PubMed:38817767] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hoy JF, Kim JH, Smith SR, Simcock XC
Quality and Reliability Analysis of YouTube as a Source for Patient Education on Dupuytren's Contracture.
J Hand Surg Glob Online: 2024 May, 6(3);313-318
[PubMed:38817746] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Abdi Dezfouli R, Esmaeilidezfouli E
Optimizing laccase selection for enhanced outcomes: a comprehensive review.
3 Biotech: 2024 Jun, 14(6);165
[PubMed:38817737] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Rawji A, Peltier MR, Mourtzanakis K, Awan S, Rana J, Pothen NJ, Afzal S
Examining the Effects of Supplemental Magnesium on Self-Reported Anxiety and Sleep Quality: A Systematic Review.
Cureus: 2024 Apr, 16(4);e59317
[PubMed:38817505] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Almazyad NS, Jahan S
Awareness of Gestational Diabetes Mellitus Maternal and Neonatal Outcomes Among Women Attending Primary Healthcare Centers in Qassim, Saudi Arabia.
Cureus: 2024 Apr, 16(4);e59345
[PubMed:38817476] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Oglat AA
A review of ultrasound contrast media.
F1000Res: 2023, 12;1444
[PubMed:38817410] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Cicutti SE, Argañaraz RA, Ramos JDG, Jaimovich SG
Fully Endoscopic Resection of an Epidermoid Cyst of the Pineal Region: Two-Dimensional Operative Video.
Neurol India: 2024 Mar 1, 72(2);266-268
[PubMed:38817170] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Kim J, Choi CH
Basic knowledge for counseling patients undergoing risk-reducing salpingo-oophorectomy.
Obstet Gynecol Sci: 2024 May 31;
[PubMed:38817104] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang J, Shi J, Gao L, Hu W, Chen M, Zhang W
High-frame-rate contrast-enhanced ultrasound to differentiate between clear cell renal cell carcinoma and angiomyolipoma.
BMC Cancer: 2024 May 30, 24(1);659
[PubMed:38816725] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Villate A, Barreto GP, Nicolás MS, Aizpurua-Olaizola O, Olivares M, Usobiaga A
Development, Characterization and In Vitro Gastrointestinal Release of PLGA Nanoparticles Loaded with Full-Spectrum Cannabis Extracts.
AAPS PharmSciTech: 2024 May 30, 25(5);120
[PubMed:38816596] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Horvath KJ, Helm JL, Black A, Chase GE, Ma J, Klaphake J, Garcia-Myers K, Anderson PL, Baker JV
A Pilot Randomized Controlled Trial of an mHealth Intervention to Improve PrEP Adherence Among Young Sexual Minority Men.
AIDS Behav: 2024 May 31;
[PubMed:38816592] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Garg S, Ni W, Chowdhury B, Weisberg EL, Sattler M, Griffin JD
BRD9 regulates normal human hematopoietic stem cell function and lineage differentiation.
Cell Death Differ: 2024 May 30;
[PubMed:38816579] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Muñoz-Bucio A, Arellano-Reynoso B, Sangari FJ, Sieira R, Thébault P, Espitia C, García Lobo JM, Seoane A, Suárez-Güemes F
Increased Brucella abortus asRNA_0067 expression under intraphagocytic stressors is associated with enhanced virB2 transcription.
Arch Microbiol: 2024 May 31, 206(6);285
[PubMed:38816572] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zhu Z, Chen L, Shen B, Liu W, Zou C, Wang Y, Ma X, Gao H, Xu D, Wu Y, Huang H
Predicting cardiovascular risk stratification in apparently healthy population by using noninvasive ultrafast ultrasound imaging.
Acad Radiol: 2024 May 29;
[PubMed:38816317] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bellew SD, Kahler Z, Hamm J, Koberlein AM, Gormley MA
The Effect of Contrast Rationing on the Development of Acute Kidney Injury During the Global Contrast Shortage.
J Emerg Med: 2024 May 3;
[PubMed:38816258] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Khan N
The media, healthcare messaging, and the doctor-patient relationship.
Br J Gen Pract: 2024 Jun, 74(743);264-265
[PubMed:38816252] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Monteiro MP, Kohl HM, Roullet JB, Gibson KM, Ochoa-Repáraz J, Castillo AR
Genetically engineered Lactococcus lactis strain constitutively expresses GABA-producing genes and produces high levels of GABA.
Lett Appl Microbiol: 2024 May 30;
[PubMed:38816215] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rios RL, Green M, Smith SK, Kafashan M, Ching S, Farber NB, Lin N, Lucey BP, Reynolds CF, Lenze EJ, Palanca BJA, SWIPED Study Team
Propofol enhancement of slow wave sleep to target the nexus of geriatric depression and cognitive dysfunction: protocol for a phase I open label trial.
BMJ Open: 2024 May 30, 14(5);e087516
[PubMed:38816055] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Thys T, Bogaert L, Dankaerts W, Depreitere B, Van Wambeke P, Brumangne S, Bultheel M, Vanden Abeele V, Moke L, Spriet A, Schelfaut S, Janssens L, Swinnen TW
Qualitative study exploring the views of patients and healthcare providers on current rehabilitation practices after lumbar fusion surgery.
BMJ Open: 2024 May 30, 14(5);e077786
[PubMed:38816040] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Xu F, Li P
Biogeochemical mechanisms of iron (Fe) and manganese (Mn) in groundwater and soil profiles in the Zhongning section of the Weining Plain (northwest China).
Sci Total Environ: 2024 May 28;173506
[PubMed:38815819] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Pacewicz CE, Mellano KT
The toll of the scroll: A path toward burnout.
Psychol Sport Exerc: 2024 May 28, 74;102681
[PubMed:38815779] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Simiola V, Miller-Matero LR, Erickson C, Nie S, Kazan R, Gootee J, Simon GE
Patient perspectives for improving treatment initiation for new episodes of depression in historically minoritized racial and ethnic groups.
Gen Hosp Psychiatry: 2024 May 21, 89;69-74
[PubMed:38815506] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Han D, Wang S, Zhao N, Cui Y, Yan H
Fabrication of magnetic hydrophilic imprinted polymers via two-step immobilization approach for targeted detecting bisphenol A.
J Chromatogr A: 2024 May 27, 1728;465032
[PubMed:38815479] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yang SL, Ma BJ, Lu YS, Chen J, Yu J, Qiu J, Qian YZ, Xu YY
Multi-omics reveals the molecular mechanism of the combined toxic effects of PFOA and 4-HBP exposure in MCF-7 cells and the key player: mTORC1.
Environ Int: 2024 May 26, 188;108778
[PubMed:38815467] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Almeida M, Brown TA, Reis YP, Almeida LHR, Billman Miller MG, Denmark K, Lebron JC, Frietchen RE, Carvalho PHB
Factor structure and measurement invariance of the Body Appreciation Scale - 2 among Brazilian gender-expansive individuals and transgender men.
Body Image: 2024 May 29, 50;101724
[PubMed:38815454] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li R, Liu F, Xu Q, Yu J, Qi K
Manipulating heterointerface to boost formation and desorption of intermediates for highly efficient alkaline hydrogen evolution.
J Colloid Interface Sci: 2024 May 24, 671;469-476
[PubMed:38815382] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kanaan MN, Pileggi CA, Karam CY, Kennedy LS, Fong-McMaster C, Cuperlovic-Culf M, Harper ME
Cystine/glutamate antiporter xCT controls skeletal muscle glutathione redox, bioenergetics and differentiation.
Redox Biol: 2024 May 25, 73;103213
[PubMed:38815331] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Felicijan T, Bogataj M
Forecasting the effect of water gastric emptying patterns on model drug release in an in vitro glass-bead flow-through system.
Acta Pharm: 2024 Jun 1, 74(2);269-287
[PubMed:38815199] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Rawat V, DeLear P, Prashanth P, Ozgurses ME, Tebeje A, Burns PA, Conger KO, Solís C, Hasnain Y, Novikova A, Endress JE, González-Sánchez P, Dong W, Stephanopoulos G, DeNicola GM, Harris I, Sept D, Mason FM, Coloff JL
Drug screening in human physiologic medium identifies uric acid as an inhibitor of rigosertib efficacy.
JCI Insight: 2024 May 30;
[PubMed:38815134] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Allen J, Watts DJ, Rand DG
Quantifying the impact of misinformation and vaccine-skeptical content on Facebook.
Science: 2024 May 31, 384(6699);eadk3451
[PubMed:38815040] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Baribi-Bartov S, Swire-Thompson B, Grinberg N
Supersharers of fake news on Twitter.
Science: 2024 May 31, 384(6699);979-982
[PubMed:38815033] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Balvanz A, Safdari M, Zacharias M, Kim D, Welton C, Oriel EH, Kepenekian M, Katan C, Malliakas CD, Even J, Klepov V, Manjunatha Reddy GN, Schaller RD, Chen LX, Seshadri R, Kanatzidis MG
Structural Evolution and Photoluminescence Quenching across the FASnI(3-x)Br(x) (x = 0-3) Perovskites.
J Am Chem Soc: 2024 May 30;
[PubMed:38815003] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mozhaeva A, Cree MJ, Durrant RJ, Vlasuyk I, Potashnikov A, Mazin V, Streeter L
A contrast sensitivity model of the human visual system in modern conditions for presenting video content.
PLoS One: 2024, 19(5);e0303987
[PubMed:38814909] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Peverill RE, Lin KY, Fogel MA, Cheung MMH, Moir WS, Corben LA, Cahoon G, Delatycki MB
Insights into the effects of Friedreich ataxia on the left ventricle using T1 mapping and late gadolinium enhancement.
PLoS One: 2024, 19(5);e0303969
[PubMed:38814901] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ufuk F, Ocak I
Enhancing Thymic Imaging: The Critical Need for Differentiating Thymolipoma from Liposarcoma in Clinical Practice.
Radiographics: 2024 Jun, 44(6);e240112
[PubMed:38814797] [WorldCat.org: ISSN ESSN ] [DOI] ( p)


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

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