ISA

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An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Faux-Nightingale A, Somayajula G, Bradbury C, Bray L, Burton C, Chew-Graham CA, Gardner A, Griffin A, Twohig H, Welsh V
Coproducing Health Information Materials With Young People: Reflections and Lessons Learned.
Health Expect: 2024 Jun, 27(3);e14115
[PubMed:38879786] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Xu R, Zhou J, Liao Z, Li X, Hu H, Hu K, Jiang P
Nanoengineering-Enhanced Capillary Cooling Achieves Sustained Thermal Protection for Ultra-High Heat Flux and Temperature.
Adv Mater: 2024 Jun 16;e2312765
[PubMed:38879784] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Soğukpınar M, Demir GÜ, Utine GE, Gönç EN, Özön ZA, Şimşek-Kiper PÖ
Review of patients with achondroplasia: a single-center's experience with follow-up and associated morbidities.
Eur J Pediatr: 2024 Jun 15;
[PubMed:38879704] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jamali H, Moradi-Alavian S, Asghari E, Esrafili MD, Payami E, Teimuri-Mofrad R
Prolonged corrosion protection via application of 4-ferrocenylbutyl saturated carboxylate ester derivatives with superior inhibition performance for mild steel.
Sci Rep: 2024 Jun 15, 14(1);13847
[PubMed:38879584] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Sarwari AQ, Javed MN, Mohd Adnan H, Abdul Wahab MN
Assessment of the impacts of artificial intelligence (AI) on intercultural communication among postgraduate students in a multicultural university environment.
Sci Rep: 2024 Jun 15, 14(1);13849
[PubMed:38879546] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jahagirdar V, Sequeira LA, Kinattingal N, Roohi TF, Alshehri S, Shakeel F, Mehdi S
Assessment of the impact of social media addiction on psychosocial behaviour like depression, stress, and anxiety in working professionals.
BMC Psychol: 2024 Jun 15, 12(1);352
[PubMed:38879545] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Worsley J, Billington J, Balabanova E
Re-engaging with arts and cultural activities at the Life Rooms: 'It's given me spring'.
BMC Complement Med Ther: 2024 Jun 15, 24(1);235
[PubMed:38879541] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Shirodkar D, Smithson SF, Keen R, Lester T, Banos-Pinero B, Burren CP
Congenital hallux valgus occurs in Fibrodysplasia Ossificans Progressiva and BMPR1B-associated dysplasia: an important distinction.
BMC Med Genomics: 2024 Jun 15, 17(1);160
[PubMed:38879467] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Rey-Ares L, Ta A, Freigofaite D, Warren S, Mac Mullen M, Carballo C, Huang L
Cost-effectiveness analysis of the pediatric 20-valent pneumococcal conjugate vaccine compared with lower-valent alternatives in Argentina.
Vaccine: 2024 Jun 14;
[PubMed:38879409] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Peimbert-Rappaport N, Hopkins KL, Lihemo G, Underwood T, Sommers T, Cuba G, Bottallo Quadros A, Kahondwa P, Shreedhar J, Ryan N, Konne NM, Abad N, Ernst K, Omar H, Gagneur A, Leask J, Zaharia R, Abdi I, Issa M, Kakaire C, Risal Pokharel D, Lemango E, Gupta A
Building a way forward: Enabling community voices to forge the path toward successful immunization for all.
Vaccine: 2024 Jun 14;
[PubMed:38879408] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Huang J, Xu DW, Li A
Can laparoscopic splenectomy and azygoportal disconnection be safely performed in patients presenting with cirrhosis, hypersplenism and gastroesophageal variceal bleeding? How to do it, tips and tricks (with videos).
Curr Probl Surg: 2024 Jul, 61(7);101501
[PubMed:38879238] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

de Assis V, Kayisli UA, Ozmen A, Semerci N, Totary-Jain H, Pakasticali N, Halade GV, Lockwood CJ, Guzeloglu-Kayisli O
Decidual Cells Block Inflammation-Mediated Inhibition of 15-Hydroxyprostaglandin Dehydrogenase in Trophoblasts.
Am J Pathol: 2024 Jun 13;
[PubMed:38879084] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Uematsu Zambello I, Holwerda EK, Lynd LR
Characterization of sugarcane bagasse solubilization and utilization by thermophilic cellulolytic and saccharolytic bacteria at increasing solid loadings.
Bioresour Technol: 2024 Jun 13;130973
[PubMed:38879051] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ejskjær L, Holm R, Kuentz M, Box KJ, Griffin BT, O'Dwyer PJ
Predictions of biorelevant solubility change during dispersion and digestion of lipid-based formulations.
Eur J Pharm Sci: 2024 Jun 13;106833
[PubMed:38878908] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mujamammi AH, Sabi EM, Alasmari SB, Aldayel AF, Alsaif AK, Annab AA, Alroba FA, Aljurayyan IN
Knowledge levels of stroke among hypertensive and diabetic patients in a tertiary hospital.
J Clin Neurosci: 2024 Jun 13, 126;136-142
[PubMed:38878708] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nerella S, Bandyopadhyay S, Zhang J, Contreras M, Siegel S, Bumin A, Silva B, Sena J, Shickel B, Bihorac A, Khezeli K, Rashidi P
Transformers and large language models in healthcare: A review.
Artif Intell Med: 2024 Jun 5, 154;102900
[PubMed:38878555] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang S, Li S, Li D, Wu J, Jiao T, Wei J, Chen X, Chen Q, Chen Q
Sulfadiazine detection in aquatic products using upconversion nanosensor based on photo-induced electron transfer with imidazole ligands and copper ions.
Food Chem: 2024 Jun 5, 456;139992
[PubMed:38878534] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang Z, Cheng Z, Gu T, Zhang Y
Determinants of users' unverified information sharing on social media platforms: A herding behavior perspective.
Acta Psychol (Amst): 2024 Jun 14, 248;104345
[PubMed:38878471] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Cottone C, Im E, Clausen S, Carr M
Is there an increased risk of otitis media in children with obstructive sleep apnea?
Int J Pediatr Otorhinolaryngol: 2024 Jun 13, 182;112014
[PubMed:38878449] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Pal A, Arnet I, Elger BS, Wangmo T
Practices and Barriers in Developing and Disseminating Plain-Language Resources Reporting Medical Research Information: A Scoping Review.
Patient: 2024 Jun 15;
[PubMed:38878237] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Vostanis P
Mental health provision for children affected by war and armed conflicts.
Eur Child Adolesc Psychiatry: 2024 Jun 15;
[PubMed:38878226] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sobol M, Błachnio A, Hryhorchuk I, Plucinska E, Stasiniewicz J, Przepiórka A
Partner's problematic social media use, woman's time perspective, and prenatal depression.
Arch Womens Ment Health: 2024 Jun 15;
[PubMed:38878134] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tong Q, Yang L, Zhang J, Zhang Y, Jiang Y, Liu X, Deng Y
Comprehensive investigations of 2-phenylethanol production by the filamentous fungus Annulohypoxylon stygium.
Appl Microbiol Biotechnol: 2024 Jun 15, 108(1);374
[PubMed:38878128] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Runnstrom MC, Lamothe PA, Faliti CE, Cheedarla N, Moreno A, Suthar MS, Nahata R, Ravindran M, Haddad NS, Morrison-Porter A, Quehl H, Ramonell RP, Woodruff M, Anam F, Zhang R, Swenson C, Polito C, Neveu W, Patel R, Smirnova N, Nyugen DC, Kim C, Hentenaar I, Kyu S, Usman S, Ngo T, Guo Z, Wu H, Daiss JL, Park J, Manning KE, Wali B, Ellis ML, Sharma S, Holguin F, Cheedarla S, Neish AS, Roback JD, Sanz I, Eun-Hyung Lee F
Patients taking benralizumab, dupilumab, or mepolizumab have lower postvaccination SARS-CoV-2 immunity.
J Allergy Clin Immunol: 2024 Jun 12;
[PubMed:38878020] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Manohar-Sindhu S, Merfeld-Clauss S, March K, Traktuev D
Activin A is a Master Regulator of Phenotypic Switch in Adipose Stromal Cells Initiated by Activated Immune Cell-secreted IL-1β.
Stem Cells Dev: 2024 Jun 15;
[PubMed:38877807] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li X, Huang G, Zhou Y, Wang K, Zhu Y
GhATL68b Regulates Cotton Fiber Cell Development by Ubiquitinating the Enzyme Required for β-oxidation of Polyunsaturated Fatty Acids.
Plant Commun: 2024 Jun 13;101003
[PubMed:38877704] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

El-Kordy A, Kanzy HM, Elgamouz A, Douma M, Mazouz H, Kawde AN, Tijani N
Synthesis and characterization of faujasite zeolite membrane for selective enrichment of Arthrobacter sp. in synthetic wastewater.
Water Sci Technol: 2024 Jun, 89(11);2921-2935
[PubMed:38877622] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Mayette E, Scalise A, Li A, McGeorge N, James K, Mahalingaiah S
Assisted reproductive technology (ART) patient information-seeking behavior: a qualitative study.
BMC Womens Health: 2024 Jun 15, 24(1);346
[PubMed:38877503] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Power RF, Doherty DE, Horgan R, Fahey P, Gallagher DJ, Lowery MA, Cadoo KA
Modifiable risk factors for cancer among people with lynch syndrome: an international, cross-sectional survey.
Hered Cancer Clin Pract: 2024 Jun 14, 22(1);10
[PubMed:38877502] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mohn C, Haga E, Nilsson HSW, Pirkis J, Mehlum L
Change in attitudes after a suicide prevention media campaign in the Mid-Norway region.
BMC Psychiatry: 2024 Jun 14, 24(1);444
[PubMed:38877487] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Liu Z, Chen Y, Lin Y, Ai M, Lian D, Zhang Y, Shen Y, Yu F
YouTube/ Bilibili/ TikTok videos as sources of medical information on laryngeal carcinoma: cross-sectional content analysis study.
BMC Public Health: 2024 Jun 14, 24(1);1594
[PubMed:38877432] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wessel D, Pogrebnyakov N
Correction to: Using Social Media as a Source of Real‑World Data for Pharmaceutical Drug Development and Regulatory Decision Making.
Drug Saf: 2024 Jun 14;
[PubMed:38877379] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wood L, Dean S, Booth V, Hayden JA, Foster NE
An online training resource for clinicians to optimise exercise prescription for persistent low back pain: Design, development and usability testing.
Musculoskeletal Care: 2024 Jun, 22(2);e1907
[PubMed:38877351] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Shigeto A, Scheier LM
Learning About Sex from Different Sources: Implications for Sexual Attitudes, Sexual Knowledge, and Risky Sexual Behavior Among U.S. College Students.
Arch Sex Behav: 2024 Jun 14;
[PubMed:38877330] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang S, He JN, Wang YJ, Zhao WY, Yang QX, Wang YN, Zhang Y, Zhang LP, Liu HW
Metabolome and Genome Analysis of a Novel Endophytic Fungus Aureobasidium pullulans KB3: Discovery of Polyketones and Polyketone Biosynthesis Pathway.
Biochem Genet: 2024 Jun 15;
[PubMed:38877158] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jabali O, Sleem H, Ayyoub AA, Saeedi M, Alawneh Y, Ishtaiyeh M
Exploring perceived challenges, adoption, and assessment of Western values of democracy and human rights in Palestine in the 2023 War on Gaza.
Sci Rep: 2024 Jun 14, 14(1);13735
[PubMed:38877141] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kim HS, Jang Y, Choi YJ, Kim HK, Kim S, Lee SH
Examining spatiotemporal crowdsensing and caching for population-dynamic OTT content delivery.
Sci Rep: 2024 Jun 14, 14(1);13783
[PubMed:38877123] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang H, Hu J, Morandi A, Nardi A, Xia F, Li X, Savo R, Liu Q, Grange R, Gigan S
Large-scale photonic computing with nonlinear disordered media.
Nat Comput Sci: 2024 Jun 14;
[PubMed:38877122] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang T
A nonlinear dimension for machine learning in optical disordered media.
Nat Comput Sci: 2024 Jun 14;
[PubMed:38877121] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Pereira D, Alline T, Cascaro L, Lin E, Asnacios A
Mechanical resistance of the environment affects root hair growth and nucleus dynamics.
Sci Rep: 2024 Jun 14, 14(1);13788
[PubMed:38877117] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Adepoju P
Meet the PrEP ambassadors who use social media to combat HIV.
Nat Med: 2024 Jun 14;
[PubMed:38877114] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tzelves L, Talyshinskii A, Nedbal C, Mykoniatis I, Beisland C, Roth I, Tsaturyan A, de Coninck V, Keller EX, Somani BK, Juliebø-Jones P
Patient perspectives on vasectomy: findings from a TikTok® content analysis.
Int J Impot Res: 2024 Jun 14;
[PubMed:38877106] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang J, Jin G, Liu Y, Xue X
Attention and sentiment of Chinese public toward rural landscape based on Sina Weibo.
Sci Rep: 2024 Jun 14, 14(1);13724
[PubMed:38877046] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Dutems J, Crespo-Monteiro N, Faverjon F, Gâté V, Turover D, Marcellin S, Ter-Ovanessian B, Héau C, Verrier I, Normand B, Jourlin Y
In situ monitoring of thin alumina passive film growth by surface plasmon resonance (SPR) during an electrochemical process.
Sci Rep: 2024 Jun 14, 14(1);13804
[PubMed:38877040] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Sandhu S, Hickey M, Koye DN, Braat S, Lew R, Hart R, Norman RJ, Hammarberg K, Anderson RA, Peate M, Eggsurance Collaborative Group
Eggsurance? A randomized controlled trial of a decision aid for elective egg freezing.
Hum Reprod: 2024 Jun 15;
[PubMed:38876980] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Dvoran M, Iyyappan R, Masek T, Pospisek M, Kubelka M, Susor A
Assessment of active translation in cumulus-enclosed and denuded oocytes during standard in vitro maturation and early embryo development.
Hum Reprod: 2024 Jun 15;
[PubMed:38876973] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chakeri Z, Nabipoorashrafi SA, Baruah D, Ballard DH, Chalian M, Mazaheri P, Hall NM, Desouches S, Chalian H
Contrast Reactions and Approaches to Staffing the Contrast Reaction Management Team.
Acad Radiol: 2024 Jun 13;
[PubMed:38876842] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hiers RD, Khajotia SS, Merritt J, Esteban Florez FL
Optimization of an ultra-bright real-time high-throughput renilla luciferase assay for antibacterial assessment of Streptococcus mutans biofilms.
Dent Mater: 2024 Jun 13;
[PubMed:38876827] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sarker P, Su X, Rojas OJ, Khan SA
Colloidal interactions between nanochitin and surfactants: Connecting micro- and macroscopic properties by isothermal titration calorimetry and rheology.
Carbohydr Polym: 2024 Oct 1, 341;122341
[PubMed:38876727] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Roas-Escalona N, Becquart F, Delair T, Dutertre F
Chitosan-based hydrogels: Influence of crosslinking strategy on rheological properties.
Carbohydr Polym: 2024 Oct 1, 341;122329
[PubMed:38876714] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Zhao W, Hong SY, Kim JY, Om AS
Effects of temperature, pH, and relative humidity on the growth of Penicillium paneum OM1 isolated from pears and its patulin production.
Fungal Biol: 2024 Jun, 128(4);1885-1897
[PubMed:38876541] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Sadaf A, Brock M, Perry CC
The chemotrophic behaviour of Aspergillus niger: Mapping hyphal filaments during chemo-sensing; the first step towards directed materials formation.
Fungal Biol: 2024 Jun, 128(4);1868-1875
[PubMed:38876539] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Sánchez-Rey LE, Moreno-Sarmiento N, Grijalba-Bernal EP, Quiroga-Cubides G
Physiological response of Metarhizium rileyi with linoleic acid supplementation.
Fungal Biol: 2024 Jun, 128(4);1827-1835
[PubMed:38876535] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Rizvi A, Saab O, Salgado SM, Abu-Hammour M, Dawod QM, Sharaiha RZ
Tightening the purse strings: a stent-free path to a lasting endoscopic gastroenterostomy.
Endoscopy: 2024 Dec, 56(S 01);E504-E505
[PubMed:38876474] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Perry M, Mardin K, Chamberlin G, Busey EA, Taillie LS, Dillman Carpentier FR, Popkin BM
National policies to limit food marketing and competitive food sales in schools: a global scoping review.
Adv Nutr: 2024 Jun 12;100254
[PubMed:38876396] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Prabhukhot GS, Eggleton CD, Vinyard B, Patel J
Using Bio-inline reactor to evaluate sanitizer efficacy in removing dual-species biofilms formed by Escherichia coli O157:H7 and Listeria monocytogenes.
J Food Prot: 2024 Jun 12;100314
[PubMed:38876365] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang Y, He L, Yang L, Zhang F, Zhang R, Wang H, Zhang G, Zhu S
Perfluoroalkyl compounds in groundwater alter the spatial pattern of health risk in an arsenic‑cadmium contaminated region.
Sci Total Environ: 2024 Jun 12;173983
[PubMed:38876341] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liu Y, Du M, Shu S, Wei J, Zhu K, Wang G
Bacterial surface properties and transport behavior actively respond to an extracellular polymeric substance gradient in saturated porous media.
Sci Total Environ: 2024 Jun 12;173889
[PubMed:38876335] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang R, Zhu Z, Peng S, Xu J, Chen Y, Wei S, Liu X
Exosome microRNA-125a-5p derived from epithelium promotes M1 macrophage polarization by targeting IL1RN in chronic obstructive pulmonary disease.
Int Immunopharmacol: 2024 Jun 13, 137;112466
[PubMed:38875998] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lewandowska-Wosik A, Chudzińska EM, Wojnicka-Półtorak A
Genotoxic effects of sub-lethal doses of nicotine and acetamiprid in neuroblasts of Drosophila melanogaster and Drosophila suzukii.
Ecotoxicol Environ Saf: 2024 Jun 13, 280;116585
[PubMed:38875821] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Khan AU, Porta GM, Riva M, Guadagnini A
In-silico mechanistic analysis of adsorption of Iodinated Contrast Media agents on graphene surface.
Ecotoxicol Environ Saf: 2024 Jun 13, 280;116506
[PubMed:38875817] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Huang J, Ye L, Wang J, Deng Y, Du B, Liu W, Su G
A new approach to monitoring typical organophosphorus compounds (OPs) in environmental media: From database building to suspect screening.
Environ Int: 2024 Jun 4, 189;108802
[PubMed:38875816] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Xie W, Wang E, Sun Q, Ouyang Z, Tian T, Zhao J, Xiao Y, Lei S, Cheng B
N-regulated three-dimensional turf-like carbon nanosheet loaded with FeCoNi nanoalloys as bifunctional electrocatalysts for durable zinc-air batteries.
J Colloid Interface Sci: 2024 Jun 8, 673;80-91
[PubMed:38875800] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang J, Tian F, Zhang L, Zhang H, Fan J, Zhang L, Xu T, Cui X
Double loading of nickel phosphide surface for efficient hydrogen evolution reaction.
J Colloid Interface Sci: 2024 Jun 10, 673;284-290
[PubMed:38875794] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kulangareth NV, Kaufman J, Oreskovic J, Fossat Y
Investigation of Deepfake Voice Detection Using Speech Pause Patterns: Algorithm Development and Validation.
JMIR Biomed Eng: 2024 Mar 21, 9;e56245
[PubMed:38875685] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Noda M, Yoshimura H, Okubo T, Koshu R, Uchiyama Y, Nomura A, Ito M, Takumi Y
Feasibility of Multimodal Artificial Intelligence Using GPT-4 Vision for the Classification of Middle Ear Disease: Qualitative Study and Validation.
JMIR AI: 2024 May 31, 3;e58342
[PubMed:38875669] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jordan A, Park A
Understanding the Long Haulers of COVID-19: Mixed Methods Analysis of YouTube Content.
JMIR AI: 2024 Jun 3, 3;e54501
[PubMed:38875666] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Li H, Wang Z, Lu Q, Wang L, Tan Y, Chen F
Free-space laser emission from Nd:YAG elliptical microdisks.
Opt Lett: 2024 Jun 15, 49(12);3304-3307
[PubMed:38875606] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Lu J, Zhang H, Xiao Y, Wang Y
An Environmental Uncertainty Perception Framework for Misinformation Detection and Spread Prediction in the COVID-19 Pandemic: Artificial Intelligence Approach.
JMIR AI: 2024 Jan 29, 3;e47240
[PubMed:38875583] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jamali AA, Berger C, Spiteri RJ
Momentary Depressive Feeling Detection Using X (Formerly Twitter) Data: Contextual Language Approach.
JMIR AI: 2023 Nov 27, 2;e49531
[PubMed:38875532] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chen X, Li M, Liang X, Su D
Performance evaluation of ML models for preoperative prediction of HER2-low BC based on CE-CBBCT radiomic features: A prospective study.
Medicine (Baltimore): 2024 Jun 14, 103(24);e38513
[PubMed:38875420] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Alhefdhi H, Alshehri N, Al Zomia A, Lahiq L, Hussain A, Alaskari A, Alasiri W, Alqarni A, Asiri F, Alqahtani A, Asiri M, Alhifthy E
Exploring quality of life, discrimination, and knowledge of parents of ADHD children in Saudi Arabia: A cross-sectional study.
Medicine (Baltimore): 2024 Jun 14, 103(24);e38102
[PubMed:38875372] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Zhang Y, Zhang Q, Yu H, Zhang Y, Luan H, Gu M
Memory-less scattering imaging with ultrafast convolutional optical neural networks.
Sci Adv: 2024 Jun 14, 10(24);eadn2205
[PubMed:38875337] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Lee C, Ji SW
Strategies for launching streaming content: Assessing movie-country relatedness and its impact on international popularity.
PLoS One: 2024, 19(6);e0305433
[PubMed:38875259] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Greig JA, Rampold S, Paskewitz E, Ruth T
Waving through a window: Agricultural research faculty perspectives on science communication challenges.
PLoS One: 2024, 19(6);e0304793
[PubMed:38875236] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lewis PA, Silajdžić E, Smith H, Bates N, Smith CA, Mancini FE, Knight D, Denning C, Brison DR, Kimber SJ
A secreted proteomic footprint for stem cell pluripotency.
PLoS One: 2024, 19(6);e0299365
[PubMed:38875182] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Maalouly E, Yamazaki R, Nishio S, Nørskov M, Kamaga K, Komai S, Chiba K, Atsumi K, Akao KI
The effect of conversation on altruism: A comparative study with different media and generations.
PLoS One: 2024, 19(6);e0301769
[PubMed:38875175] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Karataş L, Utkan Karasu A, Demirsoy N
Is YouTube a Sufficient and Reliable Source to Inform Patients About Cardiac Rehabilitation?: A Cross-sectional Study.
J Cardiopulm Rehabil Prev: 2024 Jun 17;
[PubMed:38875164] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Deng X, Gao Y, Jiang F, Zhang Y, Zhu J, Wang M
Controllable Supramolecular Aggregation of Hydroazaheptacene Tetraimides and Derivatives in Nonpolar and Polar Solvents.
ACS Appl Mater Interfaces: 2024 Jun 14;
[PubMed:38875075] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Abdulqader HA, Abood ZH
Effect of Salicylic Acid on the gene expression of FnbA and FnbB genes in Staphylococcus hominis.
Hum Antibodies: 2024 Jun 4;
[PubMed:38875028] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang G, Cai J, Hao X, Bian Z, Wu Y, Wei C, Yin X, Liu B, Fang M, Lv Y, Xie Y, Fang Y
Elucidating the discrepancy between the intrinsic structural instability and the apparent catalytic steadiness of M-N-C catalysts toward oxygen evolution reaction.
Angew Chem Int Ed Engl: 2024 Jun 14;e202409079
[PubMed:38874984] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nemati M, Alizadeh AA, Dastghaib S, Saki F
Vitamin D supplementation affects bone marrow-derived mesenchymal stem cells differentiation into insulin-producing cells.
Mol Biol Rep: 2024 Jun 14, 51(1);748
[PubMed:38874843] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Shi X, Zhang K, Qi Q, Zhou W, Yu F, Zhang Y
Human umbilical cord-derived mesenchymal stem cells attenuate hepatic stellate cells activation and liver fibrosis.
Mol Biol Rep: 2024 Jun 14, 51(1);734
[PubMed:38874773] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zerizer H, Boughachiche F, Mebarki A, Sinacer O, Rachedi K, Ait Kaki A
Partitioning purification, biochemical characterization, and milk coagulation efficiency of protease from a newly Streptomyces sp. isolate.
Braz J Microbiol: 2024 Jun 14;
[PubMed:38874743] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Oerther S, Bultas M
Heat Metrics and Maternal-Child Health Diagnoses in Emergency Departments in the United States: A Scoping Review.
MCN Am J Matern Child Nurs: 2024 Jun 11;
[PubMed:38874459] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Anderson SA, Eichner ER, Bennett S, Boden BP, Colgate B, Courson R, Davis JK, Elkins GA, Judge LW, Krueger M, Kucera KL, Niehoff K, Rooks Y, Tucker JB, Roberts WO
Preventing Exertional Heat Stroke in Football: Time for a Paradigm Shift.
Sports Health: 2024 Jun 14;19417381241260045
[PubMed:38874455] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Vornholt SM, Chen Z, Hofmann J, Chapman KW
Node Distortions in UiO-66 Inform Negative Thermal Expansion Mechanisms: Kinetic Effects, Frustration, and Lattice Hysteresis.
J Am Chem Soc: 2024 Jun 14;
[PubMed:38874381] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Esce AR, Trujillo SA, Hawley KA
Clarifying the Diagnosis and Management of Acute Uncomplicated Pediatric Mastoiditis.
Ann Otol Rhinol Laryngol: 2024 Jun 14;34894241261272
[PubMed:38874209] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang XG, Ajisafe MP, Fayad E, Katouah HA, Qin HL
A protocol for hydrogenation of aldehydes and ketones to alcohols in aqueous media at room temperature in high yields and purity.
Org Biomol Chem: 2024 Jun 14;
[PubMed:38874178] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jia Z, Zhang X, Li Z, Yan H, Tian X, Luo C, Ma K, Li L, Zhang L
Hydrogen sulfide mitigates ox‑LDL‑induced NLRP3/caspase‑1/GSDMD dependent macrophage pyroptosis by S‑sulfhydrating caspase‑1.
Mol Med Rep: 2024 Aug, 30(2);
[PubMed:38873985] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Mansoori N, Pahlavanzadeh B, Atarjalali M
Risk factors associated with multidrug-resistant tuberculosis in areas with a moderate tuberculosis burden.
Int Health: 2024 Jun 14;
[PubMed:38873833] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Buczkowska M, Chattaway MA, Jenkins C, Hungerford D, Katwa P, Kirkbride H, Hawker J
Linking epidemiological and genomic data in cases of enteric fever in England to inform clinical management and public health action.
J Antimicrob Chemother: 2024 Jun 14;
[PubMed:38873828] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fruehwirth JC, Weng AX, Perreira KM
The effect of social media use on mental health of college students during the pandemic.
Health Econ: 2024 Jun 14;
[PubMed:38873817] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ding H, Wang C, Ghorbani H, Yang S, Stepanyan H, Zhang G, Zhou N, Wang W
The impact of magnesium on shivering incidence in cardiac surgery patients: A systematic review.
Heliyon: 2024 Jun 15, 10(11);e32127
[PubMed:38873687] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lazzarotto D, Testolina M, Ebrahimi T
Subjective performance evaluation of bitrate allocation strategies for MPEG and JPEG Pleno point cloud compression.
EURASIP J Image Video Process: 2024, 2024(1);14
[PubMed:38873644] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Nguyen BT, Shiu J
Analyzing Fitzpatrick skin type distribution of vitiligo on Instagram.
Int J Womens Dermatol: 2024 Jun, 10(2);e157
[PubMed:38873620] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Artesani MC, Santarsiero S, Sitzia E, Lepri FR, Magliozzi M, Majo F, Ullmann N, Stracuzzi A, Novelli A, Cristalli G, Fiocchi A
A novel mutation in GAS8 gene associated with chronic rhinosinusitis with nasal polyposis in a case of primary ciliary dyskinesia: a case report.
Front Pediatr: 2024, 12;1345265
[PubMed:38873586] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Aran-Ramspott S, Korres-Alonso O, Elexpuru-Albizuri I, Moro-Inchaurtieta Á, Bergillos-García I
Young users of social media: an analysis from a gender perspective.
Front Psychol: 2024, 15;1375983
[PubMed:38873504] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Jaiswal A, Núñez Carrasco L, Arrow J
Do black women's lives matter? A study of the hidden impact of the barriers to access maternal healthcare for migrant women in South Africa.
Front Sociol: 2024, 9;983148
[PubMed:38873343] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chen Z
How does the media contribute to the rise of hate crimes against foreign domestic helpers in Hong Kong? An unfair problem frame and agenda setting.
Front Sociol: 2024, 9;1374329
[PubMed:38873339] [WorldCat.org: ISSN ESSN ] [DOI] ( )


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

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