ISA

Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

• Microsoft Windows (32 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Microsoft Windows (64 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Mac OSX (Leopard)
  Download and install this file.
• Linux and Unix systems, R source package
  Download this file, save it in a temporary directory, and start R. Install the downloaded package using the install.packages() function: give the full path of the saved file and use the 'repos=NULL' argument of install.packages().

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Pool J, Fatehi F, Sharifi S, Namvar M, Akhlaghpour S
Unpacking Sociotechnical Discourses on Telehealth Use and Data Protection: A Path Towards Digital Health Value Creation.
Stud Health Technol Inform: 2024 Apr 26, 313;62-67
[PubMed:38682506] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Wamsler K, Head LC, Shendruk TN
Lock-key microfluidics: simulating nematic colloid advection along wavy-walled channels.
Soft Matter: 2024 Apr 29;
[PubMed:38682298] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gray WG, Miller CT
Analysis of 'Investigating an extended multiphase flow model that includes specific interfacial area', Computer Methods in Applied Mechanics and Engineering, 418:116594, 2024.
Comput Methods Appl Mech Eng: 2024 Jun 1, 426;
[PubMed:38682154] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Yanestria SM, Effendi MH, Tyasningsih W, Moses IB, Khairullah AR, Kurniawan SC, Dameanti FNAEP, Ikaratri R, Pratama JWA, Sigit M, Hasib A, Silaen OSM
Antimicrobial resistance patterns and genes of Campylobacter jejuni isolated from chickens in Pasuruan, Indonesia.
Open Vet J: 2024 Mar, 14(3);759-768
[PubMed:38682147] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Qosimah D, Laminem L, Setyawati D, Mandasari C
Harnessing black soldier fly (Hermetia illucens) prepupae against Aeromonas hydrophila: Fermentation-based fatty acids production and its bioinformatic assessment.
Open Vet J: 2024 Mar, 14(3);902-912
[PubMed:38682129] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Taheri H, Feizabadi MM, Keikha R, Afkari R
Therapeutic effects of probiotics and herbal medications on oxalate nephrolithiasis: a mini systematic review.
Iran J Microbiol: 2024 Feb, 16(1);4-18
[PubMed:38682062] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Logan NJ, Broda KL, Pantelireis N, Williams G, Higgins CA
Chromatin accessibility profiling reveals that human fibroblasts respond to mechanical stimulation in a cell-specific manner.
JBMR Plus: 2024 May, 8(5);ziae025
[PubMed:38682000] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hebden JC, Forrester G, Zhang H, Pacis DM
Using spectral derivatives to remove the influence of hair on optical images of the static absorbing properties of tissue-like turbid media.
Neurophotonics: 2024 Apr, 11(2);025002
[PubMed:38681965] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Grzanka M, Joniec A, Rogulski J, Sobiech Ł, Idziak R, Loryś B
Impact of novel herbicide based on synthetic auxins and ALS inhibitor on weed control.
Open Life Sci: 2024, 19(1);20220868
[PubMed:38681726] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Prakash C, Indira M, Deepika B, Naveen M
Anesthetic management in a patient with acute aortic dissection and severe left ventricular systolic dysfunction.
Indian J Thorac Cardiovasc Surg: 2024 May, 40(3);396-397
[PubMed:38681707] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Almansour MA, Alhussain MN, Alsarhan MN
Awareness of Urgent Care Services Among Primary Healthcare Center Patients in Al-Ahsa, Saudi Arabia.
Cureus: 2024 Mar, 16(3);e57099
[PubMed:38681469] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Mersal FA, Mohamed Abu Negm LM, Fawzy MS, Rajennal AT, Alanazi RS, Alanazi LO
Effect of Mobile Phone Use on Musculoskeletal Complaints: Insights From Nursing Students at Northern Border University, Arar, Saudi Arabia.
Cureus: 2024 Mar, 16(3);e57181
[PubMed:38681440] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Rust BD, Christoforides E, Singh A, Wahba S, Choudhari J, Copper J, Kaspari A, Patel V, Ortiz S, Ojo DE, Sharieff KA
Evaluating the Distribution, Quality, and Educational Value of Videos Related to Knee Instability Exercises on the Social Media Platform TikTok.
Cureus: 2024 Mar, 16(3);e57104
[PubMed:38681428] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Gaur R, Patidar V, Kumar S, Sharma SK, Kalyani VC, Kalal N, Mudgal SK
Utilization of Smartphones and Attitude Regarding Their Use at the Workplace by Nurses: A Cross-Sectional Study.
Cureus: 2024 Mar, 16(3);e57000
[PubMed:38681409] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Okwuraiwe AP, Ogbonne EL, Adeniyi AO, Ihurhe PI, Musa BO, Abe TR, Shodipe OO, Audu RA
Detection of High-Risk Human Papillomavirus Genotypes Among HIV-Infected Women in Four States in Nigeria.
Cureus: 2024 Mar, 16(3);e57120
[PubMed:38681319] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ferreira LDC, Carvalho ICB, Jorge LAC, Quezado-Duval AM, Rossato M
Hyperspectral imaging for the detection of plant pathogens in seeds: recent developments and challenges.
Front Plant Sci: 2024, 15;1387925
[PubMed:38681215] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Liu J, Wang P, Wang LM, Guo J, Zhong N
Outcomes of endoscopic sclerotherapy for jejunal varices at the site of choledochojejunostomy (with video): Three case reports.
World J Gastroenterol: 2024 Apr 14, 30(14);2059-2067
[PubMed:38681128] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Liu X, Obacz J, Emanuelli G, Chambers JE, Abreu S, Chen X, Linnane E, Mehta JP, Wheatley AEH, Marciniak SJ, Fairen-Jimenez D
Enhancing Drug Delivery Efficacy Through Bilayer Coating of Zirconium-Based Metal-Organic Frameworks: Sustained Release and Improved Chemical Stability and Cellular Uptake for Cancer Therapy.
Chem Mater: 2024 Apr 23, 36(8);3588-3603
[PubMed:38681089] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Urich TJ, Lee W, Po J, Bookstein A, Barahona R, Baezconde-Garbanati L
From art to health action: lessons from a community-based, culturally tailored arts-meets-health educational campaign in Hispanic communities.
Front Public Health: 2024, 12;1385916
[PubMed:38680937] [WorldCat.org: ISSN ESSN ] [DOI] ( )

García YE, Villa-Pérez ME, Li K, Tai XH, Trejo LA, Daza-Torres ML, Montesinos-López JC, Nuño M
Wildfires and social media discourse: exploring mental health and emotional wellbeing through Twitter.
Front Public Health: 2024, 12;1349609
[PubMed:38680934] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Li H, Zhang W, Yan J
Physical activity and sedentary behavior among school-going adolescents in low- and middle-income countries: insights from the global school-based health survey.
PeerJ: 2024, 12;e17097
[PubMed:38680891] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yosep I, Suryani S, Mediani HS, Mardhiyah A, Maulana I, Hernawaty T, Hazmi H
A Scoping Review of Assertiveness Therapy for Reducing Bullying Behavior and Its Impacts Among Adolescents.
J Multidiscip Healthc: 2024, 17;1777-1790
[PubMed:38680879] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ahmadi A, Ghaderian M, Nourmohammadi H, Sabri MR, Dehghan B, Mahdavi C
Comparison of CIMT and FMD in the Brachial Artery between Children with Acyanotic Congenital Heart Disease and Healthy Controls: A Case-Control Study.
J Tehran Heart Cent: 2023 Oct, 18(4);256-260
[PubMed:38680641] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Mirza IM, Kusumasari B
Reality Construction of Disaster Discourses on Twitter: Analysis of Corpus-Assisted Discourse Study on Forest Fires in Indonesia From 2014-2019.
Ann Burns Fire Disasters: 2022 Dec, 35(4);334-345
[PubMed:38680629] [WorldCat.org: ISSN ESSN ] ( )

Zhao Z, Zhu R, Yang Y, Wang H, Wang J, Han G
Optical Analysis Method for Turbid Media Based on Wedge-Shaped Cells at Different Angles.
ACS Omega: 2024 Apr 23, 9(16);18119-18126
[PubMed:38680373] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Alunni Cardinali M, Ceccarini MR, Chiesa I, Bittolo Bon S, Rondini T, Serrano-Ruiz M, Caporali M, Tacchi S, Verdini A, Petrillo C, De Maria C, Beccari T, Sassi P, Valentini L
Mechanical Transfer of Black Phosphorus on a Silk Fibroin Substrate: A Viable Method for Photoresponsive and Printable Biomaterials.
ACS Omega: 2024 Apr 23, 9(16);17977-17988
[PubMed:38680339] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Brown JM, Sofis M, Zimmer S, Kaplan BA
Delay discounting is associated with addiction and mental health measures while controlling for health behaviors and health barriers in a large US sample.
Addict Behav Rep: 2024 Jun, 19;100545
[PubMed:38680208] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hasbi H, Iskandar H, Sonjaya H, Purwantara B, Arifiantini RI, Agil M, Pardede BP, Suyadi S, Septian WA, Samsudewa D, Damayanti E, Maulana T, Said S
Comparative developmental competence of in vitro embryos recovered from Bali cattle with normal and poor sperm motility.
Vet World: 2024 Mar, 17(3);593-601
[PubMed:38680141] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Granzotto C, Aksamija A, Tinnevelt GH, Turkina V, Sutherland K
New insight from MALDI-TOF MS and multivariate data analysis on the botanical origin of polysaccharide-based paint binders in ancient Egypt.
Anal Methods: 2024 Apr 29;
[PubMed:38680024] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chatterjee S, Gawde NC, Gupta PC
Prevalence, Reach of Anti-smokeless Tobacco Messages and Quit Attempts by Product Type: A Secondary Data Analysis from the Global Adult Tobacco Survey (GATS - 2016-17).
Asian Pac J Cancer Prev: 2024 Apr 1, 25(4);1277-1283
[PubMed:38679988] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hatzifilalithis S, Weldrick R, Harvey K
Key Learnings from 'Seniors of Canada': A Community Project Aimed to Disrupt Ageism.
Can J Aging: 2024 Apr 29;1-7
[PubMed:38679950] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Penning MJ, Browning SD, Haq KS, Kidd B
Framing Later Life Vulnerability during the COVID-19 Pandemic: A Content Analysis of Newspaper Coverage in Canada and the United States.
Can J Aging: 2024 Apr 29;1-11
[PubMed:38679941] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ali M, Tucker JD, Kpokiri EE, Wu D, Rahman MA, Mia T, Chowdhury MSA, Ahmed F, Hakim HAN, Paiker ZM, Nuha NJ
Crowdsourcing to increase hepatitis B and C testing and reduce hepatitis stigma among medical students in Bangladesh.
J Viral Hepat: 2024 Apr 28;
[PubMed:38679925] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Richartz ER, Hodgkiss BA, Black-Ocken NC, Fuentes RA, Looper JS, Withers SS
Characterization of the dissemination of canine cancer misinformation on YouTube.
Vet Comp Oncol: 2024 Apr 28;
[PubMed:38679924] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nassar AA, Demyati AK
Understanding Public Awareness and Practices of Nonsurgical Facial Dermal Fillers: A Cross-Sectional Study in Saudi Arabia.
Niger J Clin Pract: 2024 Apr 1, 27(4);528-533
[PubMed:38679777] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Adekanye AG, Onwughalu BC, Mgbe RB, Umana A, Anisi CO, Somefun AO
Risk Factors for Otitis Media with Effusion in Preschool and School Children in Calabar Municipality.
Niger J Clin Pract: 2024 Apr 1, 27(4);435-441
[PubMed:38679764] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Kathami N, Moreno-Vicente C, Martín P, Vergara-Arce JA, Ruiz-Hernández R, Gerovska D, Aransay AM, Araúzo-Bravo MJ, Camarero-Espinosa S, Abarrategi A
rhBMP-2 induces terminal differentiation of human bone marrow mesenchymal stromal cells only by synergizing with other signals.
Stem Cell Res Ther: 2024 Apr 29, 15(1);124
[PubMed:38679735] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Midzi N, Mutsaka-Makuvaza MJ, Charimari LS, Mangwiro P, Manengureni T, Mugadza G
Understanding facilitators and barriers to COVID-19 vaccination in the Zimbabwean population: a qualitative analysis.
BMC Public Health: 2024 Apr 29, 24(1);1174
[PubMed:38679733] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Nto SE, Oluwatola T, Samuel O, Okagbue H, Atobatele S, Ibanga A, Adegoke A, Emuren D, Dumbulwa SA, Sampson S, Isiaka SD, Sadiq S
Strengthening care for emergencies: what is the level of awareness and utilization of Emergency Medical Services (EMS) in FCT, Nigeria?
BMC Emerg Med: 2024 Apr 29, 24(1);73
[PubMed:38679722] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Xue H, Li X, Yang Y, Liu Y, Geng X
Social media heterogeneity and preventive behaviours during the COVID-19 outbreak: a survey on online shopping.
BMC Public Health: 2024 Apr 29, 24(1);1193
[PubMed:38679720] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hammoudi Halat D, Alsous MM, Al-Jumaili AA, Malki A, Ahmed KK, Hamad A, Darwish R, Thomas D, Bukhatwa S, Khdour M, Alkhudair N, Al Balushi AA, Khalifa S, Alsharif NZ, Rahal M
Pharmacy faculty experiences with student academic entitlement: a multinational study from the Arab world.
BMC Med Educ: 2024 Apr 28, 24(1);470
[PubMed:38679702] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Abdullah M, Ahmad B, Tufail Z, Farooq M, Ranjha KU, Scalia G, Hoz SS, Malik AA
Neurosurgery and social media: A bibliometric analysis of scientific production from 2004-2023.
World Neurosurg: 2024 Apr 26;
[PubMed:38679373] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Grossmann L
Sustainable media feedstocks for cellular agriculture.
Biotechnol Adv: 2024 Apr 26;108367
[PubMed:38679340] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Al-Atiyyat N, Ibraheemi AA, Rababa M, Othman WM, Khait AA, Jaradat DAS
Public Awareness of Palliative Care: A Nationally Representative Sample of Jordanian Adults.
J Pain Symptom Manage: 2024 Apr 26;
[PubMed:38679305] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Shah RR, Vaidya D, Grant-Kels JM
Ethics of educating teenage patients about skin care in the social media era.
J Am Acad Dermatol: 2024 Apr 26;
[PubMed:38679236] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gleaves JM, Kemps E, Prichard I, Tiggemann M
I'll Have What She's Having (But Not What They're Having): The Moderating Role of Group Membership in the Effect of Social Norms on Food Choice in an Online Environment.
Appetite: 2024 Apr 26;107374
[PubMed:38679066] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Stirnberg J, Margraf J, Precht LM, Brailovskaia J
The Relationship between Reasons for Smartphone Use, Addictive Use Tendencies, Fear of Missing Out, Depression, and Life Satisfaction: A Qualitative and Quantitative Analysis.
Psychopathology: 2024 Apr 26;1-10
[PubMed:38679019] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Saeed T, Al-Muyeed A, Zaman T, Hasan M, Ahmed T
Bioenergy-producing two-stage septic tank and floating wetland for onsite wastewater treatment: Circuit connection and external aeration.
J Environ Manage: 2024 Apr 27, 359;121011
[PubMed:38678907] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bourassa KJ, Wagner HR, Halverson TF, Ashley-Koch AE, Beckham J, Garrett ME, VA Mid Atlantic MIRECC Workgroup, Kimbrel NA, Naylor JC
Deployment-related toxic exposures are associated with worsening mental and physical health after military service: Results from a self-report screening of veterans deployed after 9/11.
J Psychiatr Res: 2024 Apr 23, 174;283-288
[PubMed:38678685] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Duarte CK, Silva LA, Andrade PMB, Martins TMM, Ghisi GLM
Barriers and facilitators to nutritional recommendations identified by participants of a cardiovascular rehabilitation program in a low resource context in Brazil.
Nutrition: 2024 Apr 3, 124;112451
[PubMed:38678640] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Khasawneh RR, Abu-El-Rub E
Comparing the effect of using 2-Mercaptoethanol in the cell culture medium of different cell passages of human mesenchymal stem cells.
Cell Mol Biol (Noisy-le-grand): 2024 Apr 28, 70(4);35-39
[PubMed:38678630] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Fetterman KA, Blancard M, Lyra-Leite DM, Vanoye CG, Fonoudi H, Jouni M, DeKeyser JL, Lenny B, Sapkota Y, George AL Jr, Burridge PW
Independent compartmentalization of functional, metabolic, and transcriptional maturation of hiPSC-derived cardiomyocytes.
Cell Rep: 2024 Apr 27, 43(5);114160
[PubMed:38678564] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zsigmond C, Vitrai J, Brys Z
[Analysis of beliefs about COVID-19 vaccines among the adult Hungarian population from a health communication perspective].
Orv Hetil: 2024 Apr 28, 165(17);664-671
[PubMed:38678550] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Tang C
Impacts of Online Studies Including Various Concept and Doubt for English Education in China.
J Psycholinguist Res: 2024 Apr 28, 53(3);41
[PubMed:38678498] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yang XY, Dong ZZ, Wang XQ, Liu YT, Zhan SY, Wang SF
[Application and advancement of digital teaching materials in teaching epidemiology].
Zhonghua Liu Xing Bing Xue Za Zhi: 2024 Apr 10, 45(4);597-601
[PubMed:38678359] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Chen HJ, Tang HL, Li PL, Xu J, Luo W, Yang J, Yu MH, Lyu P
[Survey on the awareness rate of mpox knowledge and related factors among men who have sex with men in China].
Zhonghua Liu Xing Bing Xue Za Zhi: 2024 Apr 10, 45(4);559-565
[PubMed:38678353] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ota H, Nakayama S, Takeo H, Watanabe S, Masuoka K
Contrast-Enhanced Ultrasonography in Diagnosing Intravascular Large B-Cell Lymphoma Infiltrating Liver Sinusoids.
Am J Case Rep: 2024 Apr 28, 25;e943070
[PubMed:38678318] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Rezazade M, Ketabi S, Qomi M
Effect of functionalization on the adsorption performance of carbon nanotube as a drug delivery system for imatinib: molecular simulation study.
BMC Chem: 2024 Apr 27, 18(1);85
[PubMed:38678270] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Cui Q, Yu J, Ge X, Gao G, Liu Y, He Q, Shen W
Diagnostic value of LGE and T1 mapping in multiple myeloma patients'heart.
BMC Cardiovasc Disord: 2024 Apr 27, 24(1);230
[PubMed:38678215] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bhagawati M, Paul S, Mantella L, Johri AM, Laird JR, Singh IM, Singh R, Garg D, Fouda MM, Khanna NN, Cau R, Abraham A, Al-Maini M, Isenovic ER, Sharma AM, Fernandes JFE, Chaturvedi S, Karla MK, Nicolaides A, Saba L, Suri JS
Deep learning approach for cardiovascular disease risk stratification and survival analysis on a Canadian cohort.
Int J Cardiovasc Imaging: 2024 Apr 28;
[PubMed:38678144] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kaigude AR, Khedkar NK, Jatti VS, Salunkhe S, Cep R, Nasr EA
Surface roughness prediction of AISI D2 tool steel during powder mixed EDM using supervised machine learning.
Sci Rep: 2024 Apr 27, 14(1);9683
[PubMed:38678121] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Grant AR, Niu R, Smith A, Grant ER, Smith EL
Do social media use and patient satisfaction scores correlate with online award recognition among hip and knee arthroplasty specialists?
Surgeon: 2024 Apr 26;
[PubMed:38677961] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chen CH, Chen YC, Chang YC, Hung CH, Huang CY, Tsai CL, Sun CK, Lin HY
Taurine Rescues Cancer-induced Atrophy in Human Skeletal Muscle Cells via Ameliorating the Inflammatory Tumor Microenvironment.
Anticancer Res: 2024 May, 44(5);1963-1971
[PubMed:38677769] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Vanni G, Materazzo M, Lorenzo ND, Tacconi F, Pellicciaro M, Berretta M, Mauro GD, Pistolese CA, Noce A, Longo B, Cervelli V, Buonomo OC
Contrast-enhanced Ultrasound Using Intradermal Microbubble Sulfur Hexafluoride in Non-invasive Axillary Staging in Breast Cancer: Are we Missing a Chance?
Anticancer Res: 2024 May, 44(5);2021-2030
[PubMed:38677765] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Mérida DM, Acosta-Reyes J, Bayán-Bravo A, Moreno-Franco B, Laclaustra M, Guallar-Castillón P
Phthalate exposure and subclinical carotid atherosclerosis: A systematic review and meta-analysis.
Environ Pollut: 2024 Apr 25;124044
[PubMed:38677462] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hwang G, Kim D
Transport and retention of positively charged zinc oxide nanoparticles in saturated porous media: Effects of metal oxides and clays.
Environ Pollut: 2024 Apr 25;124007
[PubMed:38677461] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fernandes AJ, Shibukawa VP, Prata AMR, Segato F, Dos Santos JC, Ferraz A, Milagres AMF
Using low-shear aerated and agitated bioreactor for producing two specific laccases by trametes versicolor cultures induced by 2,5-xylidine: Process development and economic analysis.
Bioresour Technol: 2024 Apr 25;130737
[PubMed:38677383] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Guevara-Aguirre J, Mishra A, Canepa M, Guevara C, Villacres Á, Guevara A, Peña G, Lescano D, Kopchick JJ, Balasubramanian P, Longo VD
Normal or improved cardiovascular risk factors in IGF-I-deficient adults with growth hormone receptor deficiency.
Med: 2024 Apr 22;
[PubMed:38677286] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Armstrong-Javors A, Realbuto E, Dy-Hollins ME, Scharf JM
Increase in Functional Tic Presentations in Sexual Orientation and Gender Identity Minority Youth During Coronavirus Disease 2019.
Pediatr Neurol: 2024 Apr 5, 155;182-186
[PubMed:38677240] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li W, Guo B, Zhang K, Chen X, Zhang H, Chen W, Chen H, Li H, Feng X
Ru-regulated electronic structure CoNi-MOF nanosheets advance water electrolysis kinetics in alkaline and seawater media.
J Colloid Interface Sci: 2024 Apr 21, 668;181-189
[PubMed:38677207] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Iserson KV
Reflexive control in emergency medicine.
Am J Emerg Med: 2024 Apr 23, 81;75-81
[PubMed:38677197] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tian Z, Li J, Tang H, Liu W, Hou H, Wang C, Li D, Chen G, Xia T, Wang A
ZLN005 alleviates PBDE-47 induced impairment of mitochondrial translation and neurotoxicity through PGC-1α/ERRα axis.
J Hazard Mater: 2024 Apr 16, 471;134331
[PubMed:38677116] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

McCarthy JS, Brown KE, King CK, Nielsen UN, Plaisted K, Wallace SMN, Reichman SM
Population growth of two limno-terrestrial Antarctic microinvertebrates in different aqueous soil media.
Environ Sci Pollut Res Int: 2024 Apr 27;
[PubMed:38676867] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Basch CH, Yousaf H, Fera J, Basch CE
YouTube as a Source of Information on Air Pollution: Significance for Community Health.
J Community Health: 2024 Apr 27;
[PubMed:38676829] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zão A, Altenmüller E, Azevedo L
Performance-related Pain and Disability among Music Students Versus Professional Musicians: a Multicenter Study using a Validated Tool.
Pain Med: 2024 Apr 27;
[PubMed:38676668] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fuster MG, Wang J, Fandiño O, Víllora G, Paredes AJ
Folic Acid-Decorated Nanocrystals as Highly Loaded Trojan Horses to Target Cancer Cells.
Mol Pharm: 2024 Apr 27;
[PubMed:38676649] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bayrak Durmaz MS, Yıldız R, Keskin G, Altıner S
Vaccination against respiratory tract pathogens in primary immune deficiency patients receiving immunoglobulin replacement therapy.
Tuberk Toraks: 2024 Mar, 72(1);1-8
[PubMed:38676589] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Halim MLD, Russo LN, Echave KN, Tawa S, Sakamoto DJ, Portillo MA
"She's so pretty": The development of valuing personal attractiveness among young children.
Child Dev: 2024 Apr 27;
[PubMed:38676407] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Caramaschi S, Olsson CM, Orchard E, Molloy J, Salvi D
Assessing the Effect of Data Quality on Distance Estimation in Smartphone-Based Outdoor 6MWT.
Sensors (Basel): 2024 Apr 20, 24(8);
[PubMed:38676249] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hofmann K, Hofmann S, Weigl F, Mai J, Schreiner S
DMSO and Its Role in Differentiation Impact Efficacy of Human Adenovirus (HAdV) Infection in HepaRG Cells.
Viruses: 2024 Apr 19, 16(4);
[PubMed:38675973] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bonanni P, Maio M, Beretta GD, Icardi G, Rossi A, Cinieri S
Improving Influenza Vaccination Coverage in Patients with Cancer: A Position Paper from a Multidisciplinary Expert Group.
Vaccines (Basel): 2024 Apr 16, 12(4);
[PubMed:38675802] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bouloukaki I, Christodoulakis A, Papageorgakopoulou S, Tsiligianni I
The Prevalence and Determinants of Hesitancy for Regular COVID-19 Vaccination among Primary Healthcare Patients with Asthma or COPD in Greece: A Cross-Sectional Study.
Vaccines (Basel): 2024 Apr 14, 12(4);
[PubMed:38675796] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Dang JHT, Gori A, Rios L, Rolon AM, Zhang J, Chen MS Jr
"You Don't Know If It's the Truth or a Lie": Exploring Human Papillomavirus (HPV) Vaccine Hesitancy among Communities with Low HPV Vaccine Uptake in Northern California.
Vaccines (Basel): 2024 Apr 1, 12(4);
[PubMed:38675754] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ferreira-Filho VC, Morais B, Vieira BJC, Waerenborgh JC, Carmezim MJ, Tóth CN, Même S, Lacerda S, Jaque D, Sousa CT, Campello MPC, Pereira LCJ
Influence of SPION Surface Coating on Magnetic Properties and Theranostic Profile.
Molecules: 2024 Apr 17, 29(8);
[PubMed:38675647] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Cordinier A, Petukhov I, Hucher N, Grisel M
An Innovative Methodology to Characterize, at the Molecular Scale, Interactions in Polysaccharide Aqueous Solutions.
Molecules: 2024 Apr 15, 29(8);
[PubMed:38675607] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang Z, Li S, Li Q, Wang W, Liu M, Yang S, Zhang L, Yang D, Du G, Lu Y
A Novel Cocrystal of Daidzein with Piperazine to Optimize the Solubility, Permeability and Bioavailability of Daidzein.
Molecules: 2024 Apr 10, 29(8);
[PubMed:38675529] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Park J, Koh I, Cha J, Oh Y, Shim JK, Kim H, Moon JH, Kim EH, Chang JH, Kim P, Kang SG
Comparison of Glioblastoma Cell Culture Platforms Based on Transcriptional Similarity with Paired Tissue.
Pharmaceuticals (Basel): 2024 Apr 19, 17(4);
[PubMed:38675489] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Rapp BE, Voigt A, Dirschka M, Rapp M, Länge K
Surface Acoustic Wave Resonator Chip Setup for the Elimination of Interfering Conductivity Responses.
Micromachines (Basel): 2024 Apr 5, 15(4);
[PubMed:38675312] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Song X, Lu R, Guo Z
High-Performance Reconfigurable Pipeline Implementation for FPGA-Based SmartNIC.
Micromachines (Basel): 2024 Mar 27, 15(4);
[PubMed:38675261] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jiang LL, Li ZG, Wang DY, Zhai JJ, Kong XX
Theoretical Analysis of Thermophysical Properties of 3D Carbon/Epoxy Braided Composites with Varying Temperature.
Polymers (Basel): 2024 Apr 21, 16(8);
[PubMed:38675085] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Filipek K, Otulakowski Ł, Jelonek K, Utrata-Wesołek A
Degradable Nanogels Based on Poly[Oligo(Ethylene Glycol) Methacrylate] (POEGMA) Derivatives through Thermo-Induced Aggregation of Polymer Chain and Subsequent Chemical Crosslinking.
Polymers (Basel): 2024 Apr 20, 16(8);
[PubMed:38675081] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Cheng Y, Wang J, Fang C, Du Y, Su J, Chen J, Zhang Y
Recent Progresses in Pyrolysis of Plastic Packaging Wastes and Biomass Materials for Conversion of High-Value Carbons: A Review.
Polymers (Basel): 2024 Apr 11, 16(8);
[PubMed:38674986] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Lucherini Angeletti L, Spinelli MC, Cassioli E, Rossi E, Castellini G, Brogioni G, Ricca V, Rotella F
From Restriction to Intuition: Evaluating Intuitive Eating in a Sample of the General Population.
Nutrients: 2024 Apr 21, 16(8);
[PubMed:38674930] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Aleid S, Alshahrani NZ, Alsedrah S, Carvalho AB, Lima MJ, Teixeira-Lemos E, Raposo A
The Role of Social Media Advertisement and Physical Activity on Eating Behaviors among the General Population in Saudi Arabia.
Nutrients: 2024 Apr 19, 16(8);
[PubMed:38674905] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chen H, Sosa A, Chen F
Growth and Cell Size of Microalga Auxenochlorella protothecoides AS-1 under Different Trophic Modes.
Microorganisms: 2024 Apr 20, 12(4);
[PubMed:38674779] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Marius M, Fernandez C
Non-Microbiological Mycobacterial Detection Techniques for Quality Control of Biological Products: A Comprehensive Review.
Microorganisms: 2024 Apr 12, 12(4);
[PubMed:38674732] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Shi M, Li YZ
Evaluation of the Growth, Sporulation, Fungicide Efficacy, and Host Range of Ramularia sphaeroidea.
Microorganisms: 2024 Apr 10, 12(4);
[PubMed:38674710] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Walsh D, Bevan J, Harrison F
How Does Airway Surface Liquid Composition Vary in Different Pulmonary Diseases, and How Can We Use This Knowledge to Model Microbial Infections?
Microorganisms: 2024 Apr 3, 12(4);
[PubMed:38674677] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Nakanishi A, Yomogita M, Horimoto T
Evaluation of Cellular Responses by Chlamydomonas reinhardtii in Media Containing Dairy-Processing Residues Derived from Cheese as Nutrients by Analyzing Cell Growth Activity and Comprehensive Gene Transcription Levels.
Microorganisms: 2024 Mar 31, 12(4);
[PubMed:38674659] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chen H, Yu S, Yu Z, Ma M, Liu M, Pei H
Phycoremediation Potential of Salt-Tolerant Microalgal Species: Motion, Metabolic Characteristics, and Their Application for Saline-Alkali Soil Improvement in Eco-Farms.
Microorganisms: 2024 Mar 28, 12(4);
[PubMed:38674620] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

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Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
[PubMed:15606968] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
[PubMed:12689096] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
[PubMed:12134151] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

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1. Kutalik2008NB pmid=18464786 // PDF
2. Ihmels2004 pmid=15606968 // PDF
3. Ihmels2004a pmid=15044247 // PDF
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