ISA

Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

• Microsoft Windows (32 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Microsoft Windows (64 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Mac OSX (Leopard)
  Download and install this file.
• Linux and Unix systems, R source package
  Download this file, save it in a temporary directory, and start R. Install the downloaded package using the install.packages() function: give the full path of the saved file and use the 'repos=NULL' argument of install.packages().

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Ou J, Cui W, Zhao Y, Tang Y, Williams A, Wasalathanthri D, Xu J, Lee J, Borys MC, Khetan A
Use of spectroscopic process analytical technology for rapid quality evaluation during preparation of CHO cell culture media.
Biotechnol Prog: 2024 May 3;e3477
[PubMed:38699906] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jing Z, Feng X, Li X, Zhang X, Pan C
Vaspin facilitates the proliferation and osteogenic differentiation of periodontal ligament stem cells.
J Periodontal Res: 2024 May 3;
[PubMed:38699861] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hong Y, Lee N, Kirkpatrick CE, Hu S, Lee S, Hinnant A
"Trust Me, I'm a Doctor." How TikTok Videos from Different Sources Influence Clinical Trial Participation.
Health Commun: 2024 May 3;1-12
[PubMed:38699819] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Constante Catuto MP, Tigrero-Vaca J, Villavicencio-Vasquez M, Montoya DC, Cevallos JM, Coronel-León J
Evaluation of stress tolerance and design of alternative culture media for the production of fermentation starter cultures in cacao.
Heliyon: 2024 Apr 30, 10(8);e29900
[PubMed:38699711] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yang F, Guo Q, Ma J
A neuron model with nonlinear membranes.
Cogn Neurodyn: 2024 Apr, 18(2);673-684
[PubMed:38699608] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Chipako I, Singhal S, Hollingsworth B
Impact of sexual and reproductive health interventions among young people in sub-Saharan Africa: a scoping review.
Front Glob Womens Health: 2024, 5;1344135
[PubMed:38699461] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Feng B
Gaming with health misinformation: a social capital-based study of corrective information sharing factors in social media.
Front Public Health: 2024, 12;1351820
[PubMed:38699427] [WorldCat.org: ISSN ESSN ] [DOI] ( )

He L, Chen X, Hu J, Meng Y, Zhang Y, Chen W, Fan Y, Li T, Fang J
Score based on contrast-enhanced ultrasound predict central lymph node metastasis in papillary thyroid cancer.
Front Endocrinol (Lausanne): 2024, 15;1336787
[PubMed:38699389] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Anand S, Fusco A, Günday C, Günday-Türeli N, Donnarumma G, Danti S, Moroni L, Mota C
Tunable ciprofloxacin delivery through personalized electrospun patches for tympanic membrane perforations.
Bioact Mater: 2024 Aug, 38;109-123
[PubMed:38699239] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Gary S, Landry M, Bloom S
Spectral and Electrochemical Properties of Common Photocatalysts in Water: A Compendium for Aqueous Photoredox Catalysis.
Synlett: 2023 Oct, 34(16);1911-1914
[PubMed:38699236] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Clemons EK, Savin A, Schreieck M, Teilmann-Lock S, Trzaskowski J, Waran R
A face of one's own: The role of an online personae in a digital age and the right to control one's own online personae in the presence of digital hacking.
Electron Mark: 2024, 34(1);31
[PubMed:38699202] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Koshy P, Furian L, Nickerson P, Zaza G, Haller M, de Vries APJ, Naesens M
European Survey on Clinical Practice of Detecting and Treating T-Cell Mediated Kidney Transplant Rejection.
Transpl Int: 2024, 37;12283
[PubMed:38699173] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Heston TF
Critical Gaps in Medical Research Reporting by Online News Media.
Cureus: 2024 Apr, 16(4);e57457
[PubMed:38699087] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Shankar Havaldar K, Thoyalil M, Sathyaprasad S, Zaheer A, Belchada DK, Puthukkulangara A
A Comparative Evaluation of the Periodontal Ligament Cell Viability Using Placentrex, Propolis, and Hanks' Balanced Salt Solution: An In-Vitro Study.
Cureus: 2024 Apr, 16(4);e57454
[PubMed:38699086] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Beard JH, Raissian R, Roberts L, Partain L, Midberry J, Walker T, Trombley S, MacMillan J, Morrison CN
Systematic disparities in reporting on community firearm violence on local television news in Philadelphia, PA, USA.
Prev Med Rep: 2024 Jun, 42;102739
[PubMed:38699078] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lin HH, Lin KH, Tsai YL, Chen RJ, Lin YC, Chen YC
Influences of Ipomoea batatas Anti-Cancer Peptide on Tomato Defense Genes.
Curr Protein Pept Sci: 2024 May 2;
[PubMed:38698748] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kumar V, Tolosa M, Ge X, Rao G
Reinventing shake flask fermentation: The breathable flask.
Biotechnol Bioeng: 2024 May 3;
[PubMed:38698719] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Carreño-Campos C, Villegas E, Villarreal ML, Morales-Aguilar M, Govea-Alonso D, Romero-Maldonado A, Jimenez-Capdeville ME, Rosales-Mendoza S, Ortiz-Caltempa A
Statistical Experimental Designs for cLTB-Syn Vaccine Production Using Daucus carota Cell Suspension Cultures.
Planta Med: 2024 May 2;
[PubMed:38698590] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Munzer TG, Miller AL, Weeks HM, Kaciroti N, Radesky J
Greater mobile device-prompted phone pickups are associated with daily parent stress.
Acta Paediatr: 2024 May 2;
[PubMed:38698532] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang H, Zhang X, Zhang W, Sun H
The effects of exosomes originating from different cell sources on the differentiation of bone marrow mesenchymal stem cells into schwann cells.
J Nanobiotechnology: 2024 May 3, 22(1);220
[PubMed:38698449] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mao T, Zhao X, Jiang K, Yang J, Xie Q, Fu J, Du B, Lei Z, Gao F
Evaluation of TikTok videos on acute pancreatitis: content quality and reliability analysis.
BMC Public Health: 2024 May 2, 24(1);1216
[PubMed:38698404] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

D'Alfonso A, De Carolis F, Serva A, Valiyeva S, Guido M, Pietroletti R
Haemorrhoidal disease in pregnancy: results from a self-assessment questionnaire administered by means of a social network.
BMC Gastroenterol: 2024 May 2, 24(1);150
[PubMed:38698334] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Purhonen R, Atanasova NS, Salokas J, Duplissy J, Loikkanen E, Maunula L
A Pilot Study of Aerosolization of Infectious Murine Norovirus in an Experimental Setup.
Food Environ Virol: 2024 May 2;
[PubMed:38698288] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yang L, Ma XZ, Su H, Zhang J, Sheng JQ, Jin P
Safe and effective hybrid endoscopic submucosal dissection with ALL IN ONE snare in porcine gastric model (with video).
Sci Rep: 2024 May 2, 14(1);10060
[PubMed:38698246] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mangalik S, Eichstaedt JC, Giorgi S, Mun J, Ahmed F, Gill G, V Ganesan A, Subrahmanya S, Soni N, Clouston SAP, Schwartz HA
Robust language-based mental health assessments in time and space through social media.
NPJ Digit Med: 2024 May 2, 7(1);109
[PubMed:38698174] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Patel AA, Weber PC, Levi JR
The effect of tympanostomy tubes on otoacoustic emissions.
Eur Arch Otorhinolaryngol: 2024 May 2;
[PubMed:38698162] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lai C, Toriumi F, Yoshida M
A multilingual analysis of pro Russian misinformation on Twitter during the Russian invasion of Ukraine.
Sci Rep: 2024 May 2, 14(1);10155
[PubMed:38698157] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Shoshani A, Kor A, Bar S
The impact of social media use on psychiatric symptoms and well-being of children and adolescents in the Post-COVID-19 era: a four-year longitudinal study.
Eur Child Adolesc Psychiatry: 2024 May 2;
[PubMed:38698136] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hu J, Lai Y, Yi X
Effectiveness of social media-assisted course on learning self-efficacy.
Sci Rep: 2024 May 2, 14(1);10112
[PubMed:38698034] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Istrate R, Tulus V, Grass RN, Vanbever L, Stark WJ, Guillén-Gosálbez G
The environmental sustainability of digital content consumption.
Nat Commun: 2024 May 2, 15(1);3724
[PubMed:38697974] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jalanko P, Bond B, Laukkanen JA, Brage S, Ekelund U, Laitinen T, Määttä S, Kähönen M, Haapala EA, Lakka TA
Association between arterial health and cognition in adolescents: The PANIC study.
Physiol Rep: 2024 May, 12(9);e16024
[PubMed:38697946] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Granell R, Haider S, Deliu M, Ullah A, Mahmoud O, Fontanella S, Lowe L, Simpson A, Dodd JW, Arshad SH, Murray CS, Roberts G, Hughes A, Park C, Holloway JW, Custovic A, STELAR/UNICORN investigators
Lung function trajectories from school age to adulthood and their relationship with markers of cardiovascular disease risk.
Thorax: 2024 May 2;
[PubMed:38697843] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lochman I, Thon V, Šíma P
Lessons from the COVID-19 pandemic.
Epidemiol Mikrobiol Imunol: 2024, 73(1);51-58
[PubMed:38697840] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Roca Suarez AA, Plissonnier ML, Grand X, Michelet M, Giraud G, Saez-Palma M, Dubois A, Heintz S, Diederichs A, Van Renne N, Vanwolleghem T, Daffis S, Li L, Kolhatkar N, Hsu YC, Wallin JJ, Lau AH, Fletcher SP, Rivoire M, Levrero M, Testoni B, Zoulim F
TLR8 agonist selgantolimod regulates Kupffer cell differentiation status and impairs HBV entry into hepatocytes via an IL-6-dependent mechanism.
Gut: 2024 May 2;
[PubMed:38697771] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li H, Liu S, Zhang D, Zong X, Jiang G, Zhu C
Dysregulation of ferroptosis may participate in the mitigating effect of CoCl(2) on contrast-induced nephropathy.
Nefrologia (Engl Ed): 2024 Mar-Apr, 44(2);180-193
[PubMed:38697696] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Kneist W
Robot-assisted oesophagectomy (Ivor-Lewis) for a complex stenosis previously managed by open gastrostomy tube placement.
BMJ Case Rep: 2024 May 2, 17(5);
[PubMed:38697681] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Li B, Tang M, Wang P, Liu S, Yao M, Dong J
A new method of alkalinity remediation for Cd-contaminated groundwater by PAAS-modified MgCO(3)/Mg(OH)(2) colloid.
Chemosphere: 2024 Apr 30;142200
[PubMed:38697565] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rajesh K, Anahas AMP, Prasannabalaji N, Sophiya M, Ramanathan K, Sivakumar N, Dhanraj G, Dhanasekaran D
Histological validation of in-vivo larvicidal efficacy of marine Streptomyces sp. RD06 secondary metabolites against filariasis causing Culex quinquefasciatus and statistical media optimization for larvicidal derivatives production.
Acta Trop: 2024 Apr 30;107226
[PubMed:38697451] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fatima U, Yadav N, Venkatesu P
Sustainable combination of ionic liquid and deep eutectic solvent for protecting and preserving of the protein structure: The synergistic interaction of enzymes and eco-friendly hybrid ionic fluids.
Int J Biol Macromol: 2024 Apr 30;131997
[PubMed:38697420] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Karadeniz H, Kesen S, Akhan MB, Unlu S, Kardas RC, Guler AA, Yıldırım D, Vasi I, Kaya B, Duran R, Tore NG, Erden A, Kucuk H, Goker B, Ozturk MA, Tufan A
Vascular Calcification in Takayasu Arteritis; Relationship with Metabolic Syndrome, Left Ventricular Mass Index and Intima-Media Thickness.
Hellenic J Cardiol: 2024 Apr 30;
[PubMed:38697292] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zheng D, Xie Q, Li F, Huang W, Qi Z, Dong J, Li G, Zhang F
Spatiotemporal dynamic temperature variation dominated by ion behaviors during groundwater remediation using direct current.
Environ Pollut: 2024 Apr 30;124091
[PubMed:38697248] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Brusis T
[From the expert opinion practice: Noise-induced hearing loss and chronic otitis media (Assessment for combined hearing loss)].
Laryngorhinootologie: 2024 May, 103(5);368-370
[PubMed:38697083] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Gu S, Xie L, Guan Q, Sheng X, Fang Y, Wang X
Effect of ethylene production by four pathogenic fungi on the postharvest diseases of green pepper (Capsicum annuum L.).
Int J Food Microbiol: 2024 Apr 30, 418;110729
[PubMed:38696986] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lindgren L, Holmlund S, Dunge J, Nording ML, Vinnars MT, Lindqvist M
"Navigating in a maze without a map". Partners' experiences of hyperemesis gravidarum- a qualitative study.
Sex Reprod Healthc: 2024 Apr 26, 40;100976
[PubMed:38696948] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lucy M
"Fighting demons": Stigma and shifting norms in explicit mention of overdose in obituaries, 2010-2019.
Soc Sci Med: 2024 Apr 29, 350;116926
[PubMed:38696937] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rai AK, Basak N, Chandra P, Sundha P, Kaur H, Bedwal S, Patel S, Kumar S, Choubey K, Meena RL, Sharma PC, Yadav RK
Occurrence of Sphingomonas olei with elemental S oxidation capability in sodic soil: Potential role in sodicity reclamation and plant growth promotion.
Ecotoxicol Environ Saf: 2024 May 1, 278;116396
[PubMed:38696872] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Çetin OG, Gülgöz S
Autobiographical phenomenology of memories of fiction.
Memory: 2024 May 2;1-14
[PubMed:38696742] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Buksa H, Johnson EC, Chan DHH, McBride RJ, Sanderson G, Corrigan RM, Armes SP
Arginine-Functional Methacrylic Block Copolymer Nanoparticles: Synthesis, Characterization, and Adsorption onto a Model Planar Substrate.
Biomacromolecules: 2024 May 2;
[PubMed:38696732] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Manekin D, Mitts T, Zeira Y
The politics of allyship: Multiethnic coalitions and mass attitudes toward protest.
Proc Natl Acad Sci U S A: 2024 May 7, 121(19);e2314653121
[PubMed:38696470] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Basu S, Yudkin JS, Jawad M, Ghattas H, Hamad BA, Jamaluddine Z, Safadi G, Ragi ME, Ahmad RES, Vamos EP, Millett C
Reducing non-communicable diseases among Palestinian populations in Gaza: A participatory comparative and cost-effectiveness modeling assessment.
PLOS Glob Public Health: 2024, 4(5);e0003168
[PubMed:38696423] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zheng B, Wu X, Huo X, Wang S
Can low-carbon cities pilot policy promote enterprise sustainable development? Quasi-experimental evidence from China.
PLoS One: 2024, 19(5);e0301317
[PubMed:38696407] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ijaiya MA, Anibi A, Abubakar MM, Obanubi C, Anjorin S, Uthman OA
A multilevel analysis of the determinants of HIV testing among men in Sub-Saharan Africa: Evidence from Demographic and Health Surveys across 10 African countries.
PLOS Glob Public Health: 2024, 4(5);e0003159
[PubMed:38696392] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Riley GM, Steffner R, Kwong S, Chin A, Boutin RD
MRI of Soft-Tissue Tumors: What to Include in the Report.
Radiographics: 2024 Jun, 44(6);e230086
[PubMed:38696323] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Glayzer JE, Bray BC, Kobak WH, Steffen AD, Schlaeger JM
Lack of Diversity in Research on Females with Ehlers-Danlos Syndromes: Recruitment Protocol for a Quantitative Online Survey.
JMIR Res Protoc: 2024 May 2, 13;e53646
[PubMed:38696252] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Leas EC, Ayers JW, Desai N, Dredze M, Hogarth M, Smith DM
Using Large Language Models to Support Content Analysis: A Case Study of ChatGPT for Adverse Event Detection.
J Med Internet Res: 2024 May 2, 26;e52499
[PubMed:38696245] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Stukov Y, Maybauer MO, Ricks W, Rackauskas M
Dual lumen venopulmonary extracorporeal membrane oxygenation cannulation technique using the ProtekDuo.
Multimed Man Cardiothorac Surg: 2024 May 2, 2024;
[PubMed:38696241] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gouy G, Attali L, Voillot P, Fournet P, Agostini A
Experiences of Women With Medical Abortion Care Reflected in Social Media (VEILLE Study): Noninterventional Retrospective Exploratory Infodemiology Study.
JMIR Infodemiology: 2024 May 2, 4;e49335
[PubMed:38696232] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bah M, Banchani JS, Banchani E, Baatiema L, Issakah MA
Promoting lifestyle changes in patients with prediabetes from African-Caribbean backgrounds in the United Kingdom.
Ethn Health: 2024 May 2;1-19
[PubMed:38696222] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Shah S, Famta P, Sharma A, Kumar R, Pandey G, Vambhurkar G, Srinivasarao DA, Shinde A, Prasad SB, Asthana A, Srivastava S
Quality by design empowered preparation of itraconazole albumin nanoparticles for prostate cancer.
Drug Deliv Transl Res: 2024 May 2;
[PubMed:38696091] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Meli C, Cerami C, Arighi A, Mitolo M, Serra L, Bozzali M, Bruni AC, Marra C, Lavorgna L, Dodich A, SINdem4juniors, SINdem Dementia Digital He@lth working groups
Are we…social enough? Use of social media among members of the Italian Society of Neurology for the study of dementia.
Neurol Sci: 2024 May 2;
[PubMed:38695968] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mwamlima P, Njau KN, Rwiza M, Chacha N
Evaluating the performance of faecal sludge dewatering technologies in urban settings of developing African countries: a review.
Int J Environ Health Res: 2024 May 2;1-13
[PubMed:38695860] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Vernon AR, Sandoval Medina K, Garcia MA, Cooper TV
The relationships between fear of missing out and psychological and sociocultural factors in Latinx emerging adult college students.
Cultur Divers Ethnic Minor Psychol: 2024 May 2;
[PubMed:38695818] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ojea V, Ruiz M
DLPNO-CCSD(T) and DFT study of the acetate-assisted C-H activation of benzaldimine at [RuCl(2)(p-cymene)](2): the relevance of ligand exchange processes at ruthenium(II) complexes in polar protic media.
Dalton Trans: 2024 May 2;
[PubMed:38695752] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang XY, Yuan ZF, Gan KH, Zhong Y, Huang JX, Huang WJ, Xie YH, Pei XQ
Contrast-enhanced Imaging in Peripheral Pulmonary Lesions: The Role in US-guided Biopsies.
Radiol Cardiothorac Imaging: 2024 Jun, 6(3);e230234
[PubMed:38695742] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ohira S, Gregory V, Spielvogel D
Redo partial aortic root remodelling in type A dissection with an aorto-left atrial fistula.
Multimed Man Cardiothorac Surg: 2024 May 2, 2024;
[PubMed:38695663] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hiremath SD, Kumar N, Banerjee S
Metal Ion Responsive Luminescent Bio-templated Co-assemblies: Label-Free Detection of Multi-Metal Ions in Aqueous Media.
Chem Asian J: 2024 May 2;e202400291
[PubMed:38695635] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wirtz L, Casanova F, Schaffrath U, Wegner A
Development of a telomere vector-based approach to overcome limitations caused by lethal phenotypes in the study of essential genes in Magnaporthe oryzae.
Mol Plant Pathol: 2024 May, 25(5);e13460
[PubMed:38695626] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Paul Raj E, Rajesh P, Anjali S, Dash S
Effect of irradiated nonionic surfactant on drug-protein binding.
J Biomol Struct Dyn: 2024 May 2;1-15
[PubMed:38695559] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Batista KBC, Fernandez MV, Barberia LG, Silva ETD, Pedi VD, Pontes BMLM, Araujo G, Moreira RDS, Pedrosa M, Verotti MP, Henriques CMP, Florêncio AC, Amorim MMR
[Overview of long COVID in Brazil: a preliminary analysis of a survey to think about health policies].
Cad Saude Publica: 2024, 40(4);e00094623
[PubMed:38695461] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hasdeu S, Beliera A, Alvarez J, Sanchez-Viamonte J
[Asymmetries between national articulation and the autonomy of state governments in implementing health technologies to fight COVID-19 in Argentina].
Cad Saude Publica: 2024, 40(4);e00117923
[PubMed:38695457] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Czaplicki L, Barker HE, Thrul J, Cui Y, Yang T, Cohen JE
Quantifying cigarette and e-cigarette marketing exposure among Chinese adolescents using ecological momentary assessment.
Nicotine Tob Res: 2024 May 2;
[PubMed:38695345] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sari E, Gungor Satilmis İ
Concerns about fertility, social appearance, and relationships in young adults with polycystic ovary syndrome.
J Reprod Infant Psychol: 2024 May 2;1-11
[PubMed:38695338] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chen D, Jia Y, Wang X, Guo L
Micro- and Mesoporous Structural Effects of Beta Zeolites for Volatile Organic Compound Sorption.
Langmuir: 2024 May 2;
[PubMed:38695309] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Conaty S, Ike JD, Lane W, Bayerle H, Logan RA, Parker RM
Understanding Breast Cancer Images in Art History as a Form of Health Communication.
J Health Commun: 2024 May 2;1-7
[PubMed:38695299] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li J, Yu X, Shu D, Liu H, Gu M, Zhang K, Mao G, Yang S, Yang R
Accelerated Activity-Based Sensing by Fluorogenic Reporter Engineering Enables to Rapidly Determine Unstable Analyte.
Anal Chem: 2024 May 2;
[PubMed:38695281] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Baltrus DA, Carter M, Clark M, Smith C, Spraker J, Inderbitzin P, Arnold AE
Luteibacter mycovicinus sp. nov., a yellow-pigmented gammaproteobacterium found as an endohyphal symbiont of endophytic Ascomycota.
Int J Syst Evol Microbiol: 2024 May, 74(5);
[PubMed:38695275] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Urciuolo F, Imparato G, Netti PA
Engineering cell instructive microenvironments for in vitro replication of functional barrier organs.
Adv Healthc Mater: 2024 May 2;e2400357
[PubMed:38695274] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Addo J, Davy M, Newlands A, Orford L, Guta P, Scott R, van Hasselt J, Maher-Edwards G
The Africa non-communicable diseases (NCD) Open Lab: Impact of a portfolio of clinical studies to deepen the understanding of NCDs in sub-Saharan Africa.
J Glob Health: 2024 May 3, 14;04065
[PubMed:38695258] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Sellitto S, Tarantino L, Barone F, Barone N, Perna A, Lucariello A, Guerra G, De Luca A, Filippelli A, Sellitto C
Contrast-Enhanced Ultrasound as a Diagnostic Procedure in Renal Diseases: A Case Report.
G Ital Nefrol: 2024 Apr 29, 41(2);
[PubMed:38695227] [WorldCat.org: ISSN ESSN ] ( e)

Hussein M, Siddiq A, Ismail HM, Mansy N, Ellakwa DE, Nassif M, Hussein AA, Abdullah Alzedaar JK, Iloanusi CA, Omran MO, Rourou KM, Suvvari TK, Yazbek S, Ghazy RM
Cross-Country Discrepancies in Monkeypox Vaccine Hesitancy Among Postgraduate and Undergraduate Medical Students.
Disaster Med Public Health Prep: 2024 May 2, 18;e82
[PubMed:38695200] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Thar CH, Lee YH, Choe YJ
Human Immunodeficiency Virus/Acquired Immunodeficiency Syndrome Knowledge and Attitude among Myanmar Women.
Int J MCH AIDS: 2024, 13;e003
[PubMed:38694892] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yunitawati D, Latifah L, Suryaputri IY, Laksono AD
A Higher Maternal Education Level Could Be a Critical Factor in the Exceeded Cesarean Section Delivery in Indonesia.
Iran J Public Health: 2024 Jan, 53(1);219-227
[PubMed:38694861] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Azarbakhsh H, Rezaei F, Dehghani SS, Hassanzadeh J, Janfada M, Mirahmadizadeh A
Trend Analysis of Lung Cancer Mortality and Years of Life Lost (YLL) in South of Iran, 2004-2019.
Iran J Public Health: 2024 Jan, 53(1);238-245
[PubMed:38694860] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Wojtara MS, Guinto TM, Adebogun DK, Uwishema O
Exploring Digital Dermatology: An Analysis of Ichthyosis Content on TikTok.
Cureus: 2024 Apr, 16(4);e57401
[PubMed:38694685] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Algahtani R, Khateeb F, Khateb F, Alhazmi AS, Alshareef BA, Fatani BA
Public Awareness of Epilepsy and Social Attitude Toward Persons With Epilepsy Among the General Population in Makkah, Saudi Arabia.
Cureus: 2024 Apr, 16(4);e57398
[PubMed:38694680] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Harmawati Y, Sapriya, Abdulkarim A, Bestari P, Sari BI
Data of digital literacy level measurement of Indonesian students: Based on the components of ability to use media, advanced use of digital media, managing digital learning platforms, and ethics and safety in the use of digital media.
Data Brief: 2024 Jun, 54;110397
[PubMed:38694627] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Fang R, Li S, Lyu Y, Yang X, Wang T, Li S
Behavioral and cognitive factors influencing tick-borne disease risk in northeast China: Implications for prevention and control strategies.
One Health: 2024 Jun, 18;100736
[PubMed:38694616] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Shanshal SA, Khaleel SM, Hammoodi SH
Sun Exposure and Usage of Sun Protection: Knowledge, Perception and Practice among University Students.
Malays J Med Sci: 2024 Apr, 31(2);208-221
[PubMed:38694582] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Chao C, Dang C, Reddy N, Alharbi S, Doan J, Karthikeyan A, Applewhite B, Jiang B
Characterization of a phenol-based model for denervation of the abdominal aorta and its implications for aortic remodeling.
JVS Vasc Sci: 2024, 5;100202
[PubMed:38694477] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bradley D, Sarpaki S, Mirabello V, Giuffrida SG, Kociok-Köhn GI, Calatayud DG, Pascu SI
Shedding light on the use of graphene oxide-thiosemicarbazone hybrids towards the rapid immobilisation of methylene blue and functional coumarins.
Nanoscale Adv: 2024 Apr 30, 6(9);2287-2305
[PubMed:38694476] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Harzif AK, Kusuma B, Ummah N, Puspawardani AR, Nurbaeti P, Wiweko B
Fertility education on Instagram: advertisements vs. educational content analysis for posts in Bahasa (Indonesian language).
Ann Med Surg (Lond): 2024 May, 86(5);2639-2643
[PubMed:38694335] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Shrateh ON, Habib A, Jalamneh B, Omar BMM, Naasan M
The level of medical students' knowledge regarding the prevention of cervical cancer.
Ann Med Surg (Lond): 2024 May, 86(5);2591-2597
[PubMed:38694304] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ali I, Hassan Z, Rahat Ullah A, Noman Khan Wazir M, Fida N, Idrees Khan M, Masood A, Zulfiqar Ali Shah S, Ali W, Ullah I, Ashraf A, Hussain A, Ahsan A, Hemmeda L, Mustafa Ahmed GE, Abbasher Hussien Mohamed Ahmed K
Healthcare workers' knowledge and risk perception regarding the first wave of COVID-19 in Khyber Pakhtunkhwa, Pakistan: an online cross-sectional survey.
Ann Med Surg (Lond): 2024 May, 86(5);2562-2571
[PubMed:38694302] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ahmad M, Kennedy BA, Son S, McIntyre AD, Lazarte J, Wang J, Hegele RA
Carotid intimamedia thickness in patients with severe hypertriglyceridemia.
Atheroscler Plus: 2024 Jun, 56;7-11
[PubMed:38694144] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Jahan N, Hoque S, Hossain MA, Hoon JS, Pipul MMUA
SNS citizenship behavior based on D&M information system success model and social capital theory: Mediating role of subjective well-being.
Heliyon: 2024 May 15, 10(9);e29982
[PubMed:38694120] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kannen C, Sindermann C, Montag C
On the Willingness to Pay for social media/messenger services taking into account personality and sent/received messages among WhatsApp users.
Heliyon: 2024 May 15, 10(9);e28840
[PubMed:38694101] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yeasmin N, Heme MA, Mumu MN, Shovo TE, Aktar R, Nizam H, Hossain MT, Shohel TA
A qualitative investigation to understand the challenges and representation of women in the media industry of Bangladesh.
Heliyon: 2024 May 15, 10(9);e30083
[PubMed:38694078] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chernbumroong S, Worragin P, Wongwan N, Intawong K, Homla P, Puritat K
Digitization of myth: The HimmapanVR Project's role in cultural preservation.
Heliyon: 2024 May 15, 10(9);e30052
[PubMed:38694074] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Xu X, Wang S, Li J, Qiao T
Environmental regulatory intensity, green finance and corporate green sustainable development performance.
Heliyon: 2024 May 15, 10(9);e30114
[PubMed:38694050] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zhang B, Gan Y, Liu C, He Q, Chen J, Li J, You Y, Fan W, Wang Y, Bai G
An acid-chromic luminescent lanthanide metallogel for time-dependent information encryption and anti-counterfeiting.
Dalton Trans: 2024 May 2;
[PubMed:38693908] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

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Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
[PubMed:15606968] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
[PubMed:12689096] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
[PubMed:12134151] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

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1. Kutalik2008NB pmid=18464786 // PDF
2. Ihmels2004 pmid=15606968 // PDF
3. Ihmels2004a pmid=15044247 // PDF
4. Bergmann2004 pmid=14737187 // PDF
5. Bergmann2003 pmid=12689096 //PDF
6. Ihmels2002 pmid=12134151 // PDF

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