ISA

Revision as of 11:28, 1 February 2016 by Micha (talk | contribs)



An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Benbassat J
Trust in public health policy in the time of the COVID-19 epidemic in Israel.
Isr J Health Policy Res: 2024 Apr 25, 13(1);24
[PubMed:38664713] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ani JI, Ajayi-Ojo VO, Batisai K
Financial scarcity, psychological well-being and perceptions: an evaluation of the Nigerian currency redesign policy outcomes.
BMC Public Health: 2024 Apr 25, 24(1);1164
[PubMed:38664712] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Al-Mamun F, Hasan ME, Mostofa NB, Akther M, Mashruba T, Arif M, Chaahat AH, Salam AB, Akter M, Abedin MAA, Bulbul MIA, Adnan MS, Islam MS, Ahmed MS, Shahin MSM, Islam S, Hussain MM, Al Habib A, ALmerab MM, Gozal D, Muhit M, Roy N, Mamun MA
Prevalence and factors associated with digital addiction among students taking university entrance tests: a GIS-based study.
BMC Psychiatry: 2024 Apr 25, 24(1);322
[PubMed:38664623] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Saway BF, Courtney J, Barley J, Frankel B, Hofstetter C, Kalhorn S
Contrast enhanced ultrasound for traumatic spinal cord injury: an overview of current and future applications.
Spinal Cord Ser Cases: 2024 Apr 25, 10(1);31
[PubMed:38664470] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gumisirizah N, Nzabahimana J, Muwonge CM
Students' performance, attitude, and classroom observation data to assess the effect of problem-based learning approach supplemented by YouTube videos in Ugandan classroom.
Sci Data: 2024 Apr 25, 11(1);428
[PubMed:38664410] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Joshi K, Diaz A, O'Keeffe K, Schaffer JD, Chiarot PR, Huang P
Flow in temporally and spatially varying porous media: a model for transport of interstitial fluid in the brain.
J Math Biol: 2024 Apr 25, 88(6);69
[PubMed:38664246] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zehrfeld N, Abelmann M, Benz S, Zippel CL, Beider S, Kramer E, Seeliger T, Sogkas G, Gödecke V, Ahrenstorf G, Armbruster FP, Skripuletz T, Witte T, Derda AA, Sonnenschein K, Ernst D
Primary Sjögren's syndrome independently promotes premature subclinical atherosclerosis.
RMD Open: 2024 Apr 24, 10(2);
[PubMed:38663882] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Strader MB, Saha AL, Fernandes C, Sharma K, Hadiwinarta C, Calheiros D, Conde-de-Oliveira G, Gonçalves T, Slater JE
Distinct proteomes and allergen profiles appear across the life cycle stages of Alternaria alternata.
J Allergy Clin Immunol: 2024 Apr 23;
[PubMed:38663817] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Akkipeddi SMK, Ellens N, Singh R, Jalal MI, Schartz D, Bender MT
"Empty Cyst Sign" appearance of CSF-venous fistula on digital spinal myelography.
World Neurosurg: 2024 Apr 23;
[PubMed:38663740] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ruiz-Llacsahuanga B, Sanchez-Tamayo M, Dev Kumar G, Critzer F
Comparison of three air sampling methods for the quantification of Salmonella, Shiga-toxigenic Escherichia coli (STEC), coliforms, and generic E. coli from bioaerosols of cattle and poultry farms.
J Food Prot: 2024 Apr 23;100282
[PubMed:38663638] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bernstein DN, Hammoor BT, Clements CU, Tobert DG, Cha TD, Aidlen JP, Hershman SH, Bono CM, Fogel HA
Assessing the Variation and Drivers of Cost in 1-Level Lumbar Fusion: A Time-Driven Activity-Based Costing Analysis.
Spine J: 2024 Apr 23;
[PubMed:38663483] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

DeRidder LB, Hare KA, Lopes A, Jenkins J, Fitzgerald N, MacPherson E, Fabian N, Morimoto J, Chu JN, Kirtane AR, Madani W, Ishida K, Kuosmanen JLP, Zecharias N, Colangelo CM, Huang HW, Chilekwa M, Lal NB, Srinivasan SS, Hayward AM, Wolpin BM, Trumper D, Quast T, Rubinson DA, Langer R, Traverso G
Closed-loop automated drug infusion regulator: A clinically translatable, closed-loop drug delivery system for personalized drug dosing.
Med: 2024 Apr 23;
[PubMed:38663403] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Schäfer JF
Kommentar zu „KINDER – Lymphomstaging und -restaging mit der kontrastmittelfreien FDG-PET/MRT“.
Rofo: 2024 May, 196(5);422-423
[PubMed:38663378] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Santos RP, Moreira SSJ, Bezerra LGP, Cavalcante YCS, Pereira AG, Matos TM, Oliveira MF, Silva AR
Comparison between commercial media and TRIS-egg yolk extender in the refrigerated storage of collared peccary semen at 17°C.
Anim Reprod Sci: 2024 Apr 22, 265;107478
[PubMed:38663148] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Varisco TJ, Fish H, Bolin J, Dadiomov D, Hill LG, Essien EJ, Wanat MA, Ginsburg D, Waggener J, Yazdanfard S, Song J, Chi W, Thornton D
Protocol for the development of a consensus practice guideline To address clinical and regulatory barriers to buprenorphine dispensing in community pharmacy.
Arch Public Health: 2024 Apr 25, 82(1);58
[PubMed:38664777] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kim Y
Personality of organizational social media accounts and its relationship with characteristics of their photos: analyses of startups' Instagram photos.
BMC Psychol: 2024 Apr 25, 12(1);233
[PubMed:38664723] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Serruys PW, Tobe A, Ninomiya K, Garg S, Finn AV, Scheller B, Cortese B, Colombo A, Reimers B, Basavarajaiah S, Sharif F, Fezzi S, Gao C, Tao L, Onuma Y
Editorial: Is the axiom of balloon angioplasty, "the more you gain the more you lose", still true in the era of DCB with paclitaxel?
Cardiovasc Revasc Med: 2024 Apr 6;
[PubMed:38664133] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang Q, Gao S, Li B, Li Q, Li X, Cheng J, Peng Z, Liang J, Zhang K, Hai J, Zhang B
Lithium-Doped Titanium Dioxide-Based Multilayer Hierarchical Structure for Accelerating Nerve-Induced Bone Regeneration.
ACS Appl Mater Interfaces: 2024 Apr 25;
[PubMed:38663861] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kermansaravi M, Shahabi Shahmiri S, Yarigholi F, Mehraz A
Conversion of one anastomosis gastric bypass to distal Roux-en-Y gastric bypass due to recurrent weight gain and gastroesophageal reflux disease: A video case report.
Asian J Endosc Surg: 2024 Jul, 17(3);e13314
[PubMed:38663858] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Poulsen VV, Jensen AB, Hadi A, Ærenlund MP, Karstensen JG, Novovic S
Pancreatic-portal vein fistula in acute pancreatitis successfully treated with endoscopic approach.
Endoscopy: 2024 Dec, 56(S 01);E354-E355
[PubMed:38663856] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Murley WD, Oberle CD, Howard KJ, Perrotte JK
Anxiety connects social media use to food and alcohol disturbance and disordered eating when social support is low.
Eat Behav: 2024 Apr 18, 53;101879
[PubMed:38663045] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rahman A, Alam S, Jahan SA, Mollah MYA, Susan MABH
Understanding the Droplet Diffusion in Ionic Liquid Microemulsions.
J Phys Chem B: 2024 Apr 25;
[PubMed:38663000] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mercurio AM, Lynch OL, Shubin Stein BE, Matzkin EG, Hannafin JA, LaPorte D, Ammerman BM
Very Few ACGME-accredited Orthopaedic Surgery Residency Programs Have Web-accessible Leave Policies Dedicated to Parental Leave for Residents, Despite ACGME Requirements.
Clin Orthop Relat Res: 2024 Apr 25;
[PubMed:38662935] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chang J, Kerr D 4th, Zheng M, Seyler T
Chondrocyte Invasion May Be a Mechanism for Persistent Staphylococcus Aureus Infection In Vitro.
Clin Orthop Relat Res: 2024 Apr 23;
[PubMed:38662927] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Alkheyr Z, Murad M, Das P, Aljenaee K, Kamel C, Hajji SA, Flood J, Atkin SL, Ali KF
Self-esteem and body image satisfaction in women with PCOS in the Middle East: Cross-sectional social media study.
PLoS One: 2024, 19(4);e0301707
[PubMed:38662709] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Liu Y, Yang Y, Zhang X, Yang Y
The impact of technological innovation on the green digital economy and development strategies.
PLoS One: 2024, 19(4);e0301051
[PubMed:38662690] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hussain A, Hussain Z, Gogate M, Dashtipour K, Ng D, Riaz MS, Goman A, Sheikh A, Hussain A
Impact of the Covid-19 pandemic on audiology service delivery: Observational study of the role of social media in patient communication.
PLoS One: 2024, 19(4);e0288223
[PubMed:38662689] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Weng S, Huang H, Huang L, Zhang Z
Recent Progress on Targeted Gel Media for the Application of Bioanalysis.
Crit Rev Anal Chem: 2024 Apr 25;1-20
[PubMed:38662629] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Robb CL, Marquis KM, Steinbrecher KL, Hammer MM, Henry T, Bhalla S, Raptis CA
Evaluation and Utilization of Flow Artifacts at CT.
Radiographics: 2024 May, 44(5);e230134
[PubMed:38662588] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Dileep NP, Patel J, Pushkar Y
Evaluation of Ce-MOFs as Photoanode Materials for the Water Oxidation Reaction: The Effect of Doping with [Ru(bpy)(dcbpy)(H(2)O)(2)](2+) Catalyst.
Inorg Chem: 2024 Apr 25;
[PubMed:38662572] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhao Y, Paulus MP, Tapert SF, Bagot KS, Constable RT, Yaggi HK, Redeker NS, Potenza MN
Screen time, sleep, brain structural neurobiology, and sequential associations with child and adolescent psychopathology: Insights from the ABCD study.
J Behav Addict: 2024 Apr 24;
[PubMed:38662452] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Abeykoon SW, White RJ
Single Voltammetric Sweep Calibration-Free Interrogation of Electrochemical Aptamer-Based Sensors Employing Continuous Square Wave Voltammetry.
Anal Chem: 2024 Apr 25;
[PubMed:38662230] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wani BA, Magray JA, Ganie AH, Rashid S, Roof-Ul-Qadir, Javid H, Nawchoo IA
Seed biology imperative for conservation and restoration of Swertia thomsonii C.B. Clarke-an endemic medicinal plant of Himalaya.
Environ Monit Assess: 2024 Apr 25, 196(5);472
[PubMed:38662176] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Duc HD, Oanh NT, Dieu Thuy NT, Kim Xuan NT
Degradation of pretilachlor and fenclorim and effects of these compounds on bacterial communities under anaerobic condition.
Biodegradation: 2024 Apr 25;
[PubMed:38662140] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Deantas-Jahn C, Mendoza SN, Licona-Cassani C, Orellana C, Saa PA
Metabolic modeling of Halomonas campaniensis improves polyhydroxybutyrate production under nitrogen limitation.
Appl Microbiol Biotechnol: 2024 Apr 25, 108(1);310
[PubMed:38662130] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Vincent J, Fortunati L
How Prepaid Billing in Italy Helped Shape the Global Diffusion of Mobile Phones.
Technol Cult: 2024, 65(1);293-314
[PubMed:38661802] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Eales L, Banegas J, Cherubini FDS, Ibrahim SA, Ahn RJ, Nelson MR, Dwivedi R, Ferguson GM
Screening parent-adolescent relationships, screen behaviors, tridimensional acculturation, and health among Black immigrant and refugee adolescents during dual pandemics.
J Fam Psychol: 2024 Apr 25;
[PubMed:38661641] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wenzel J, Seideman C, Semins MJ
Occupational Radiation Exposure During Pregnancy: A Survey of Urologists on Perception, Experience, and Practice Patterns.
J Endourol: 2024 Apr 25;
[PubMed:38661543] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Leonardsen AL, Brevik L
Cell Phones in the OR: A Cross-Sectional Study of Norwegian Perioperative Nurses' Knowledge, Practice, and Attitudes.
AORN J: 2024 May, 119(5);e1-e10
[PubMed:38661447] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Pratiwi RA, Avidhianita D, Margono A, Julianto I, Nyoman Putri Artiningsih DA, Megantoro A
Potential Use of L-Arginine Amino Acids towards Proliferation and Migratory Speed Rate of Human Dental Pulp Stem Cells (hDPSCs).
Eur Endod J: 2024 Apr 25;
[PubMed:38661064] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Collins MKR, Lazard AJ, Dillman Carpentier F, Comello ML, Benedict C, Kent EE, Yu C
Reel reflections: the role of entertainment media narratives in coping among young adult cancer survivors.
J Psychosoc Oncol: 2024 Apr 25;1-22
[PubMed:38661002] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Van Borek S, Logie CH, Mbende B, Ghoma Linguissi LS, MacKenzie F, Ouedraogo A, Lad A, Boumba A, Gittings L, Loemba H
Esengo ya Bosembo ("Joy of Equity"): Development of an Advocacy Video to Reduce Stigma and to Promote Sexual and Reproductive Health and Rights of Women Sex Professionals in Pointe-Noire, Congo Republic.
Health Promot Pract: 2024 Apr 25;15248399241245053
[PubMed:38660994] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Higashi Y, Imafuku S, Tsuruta N, Murotani K, Western Japan Inflammatory Skin Disease Research Group
Systemic therapy for psoriasis and the risk of cutaneous infections.
J Dermatol: 2024 Apr 25;
[PubMed:38660962] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Andreassen P, Jensen SD, Bruun JM, Sandbæk A
Managing the new wave of weight loss medication in general practice: A qualitative study.
Clin Obes: 2024 Apr 25;e12666
[PubMed:38660941] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zheng X, Li C, Ali S, Adebayo TS
Global chessboard: Analyzing how geopolitical risk shapes renewable energy technology investments.
Risk Anal: 2024 Apr 25;
[PubMed:38660914] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhao SC, Li H, Wang M, Zhao YH, Li XJ, Jin SY
[ADAMTS13-Mediated Proteolytic Cleavage of Unusually Large von Willebrand Factor Polymers on Endothelial Cells in the Absence of Fluid Shear Stress].
Zhongguo Shi Yan Xue Ye Xue Za Zhi: 2024 Apr, 32(2);532-540
[PubMed:38660863] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Hawkins L, Farrow C, Clayton M, Thomas JM
Can social media be used to increase fruit and vegetable consumption? A pilot intervention study.
Digit Health: 2024 Jan-Dec, 10;20552076241241262
[PubMed:38660624] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Riboldi I, Calabrese A, Piacenti S, Capogrosso CA, Paioni SL, Bartoli F, Carrà G, Armes J, Taylor C, Crocamo C
Understanding University Students' Perspectives towards Digital Tools for Mental Health Support: A Cross-country Study.
Clin Pract Epidemiol Ment Health: 2024, 20;e17450179271467
[PubMed:38660572] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Cero I, Luo J, Falligant JM
Lexicon-Based Sentiment Analysis in Behavioral Research.
Perspect Behav Sci: 2024 Mar, 47(1);283-310
[PubMed:38660506] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Cyr B, Cabrera Ranaldi EDLRM, Hadad R, Dietrich WD, Keane RW, de Rivero Vaccari JP
Extracellular vesicles mediate inflammasome signaling in the brain and heart of Alzheimer's disease mice.
Front Mol Neurosci: 2024, 17;1369781
[PubMed:38660388] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Venkataraman P, Nagendra P, Ahlawat N, Brajesh RG, Saini S
Convergent genetic adaptation of Escherichia coli in minimal media leads to pleiotropic divergence.
Front Mol Biosci: 2024, 11;1286824
[PubMed:38660375] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Mojoudi M, Taggart MS, Kharga A, Chen H, Dinicu AT, Wilks BT, Markmann JF, Toner M, Tessier SN, Yeh H, Uygun K
Anti-apoptotic treatment of warm ischemic male rat livers in machine perfusion improves symptoms of ischemia-reperfusion injury.
Heliyon: 2024 Apr 30, 10(8);e29519
[PubMed:38660283] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Balasubramanian M, Girija S
Overexpression of AtMYB12 transcription factor simultaneously enhances quercetin-dependent metabolites in radish callus.
Heliyon: 2024 Apr 30, 10(8);e27053
[PubMed:38660267] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zeng L, Asif M
Advertisement design in dynamic interactive scenarios using DeepFM and long short-term memory (LSTM).
PeerJ Comput Sci: 2024, 10;e1937
[PubMed:38660215] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Mnassri K, Farahbakhsh R, Chalehchaleh R, Rajapaksha P, Jafari AR, Li G, Crespi N
A survey on multi-lingual offensive language detection.
PeerJ Comput Sci: 2024, 10;e1934
[PubMed:38660178] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Poldee S, Metheetrairut C, Suthammarak W, Trakarnsanga K
Angiotensin II promotes erythroid proliferation in a three-stage erythroid culture system.
MethodsX: 2024 Jun, 12;102714
[PubMed:38660027] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kim S, Kim K, Wonjeong Jo C
Accuracy of a large language model in distinguishing anti- and pro-vaccination messages on social media: The case of human papillomavirus vaccination.
Prev Med Rep: 2024 Jun, 42;102723
[PubMed:38659997] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Palacio PL, Greenwald J, Nguyen KT, Shantaram D, Butsch BL, Kim Y, Dattu MH, Noria S, Brethauer SA, Needleman BJ, Wysocki V, Hsueh W, Reátegui E, Magaña SM
Novel multiparametric bulk and single EV pipeline for adipose cell-specific biomarker discovery in paired human biospecimens.
bioRxiv: 2024 Apr 19;
[PubMed:38659953] [DOI] ( e)

Olum R, Ahaisibwe B, Atuhairwe I, Balizzakiwa T, Kizito P, Apiyo M, Kalanzi J, Nabawanuka A, Bahatungire R, Kerry V
Readiness To Manage Ebola Virus Disease Among Emergency Healthcare Workers in Uganda: A Nationwide Multicenter Survey.
Res Sq: 2024 Apr 9;
[PubMed:38659914] [DOI] ( e)

Siddiq MA, Duveau F, Wittkopp PJ
Plasticity and environment-specific relationships between gene expression and fitness in Saccharomyces cerevisiae.
bioRxiv: 2024 Apr 15;
[PubMed:38659876] [DOI] ( e)

Chen T, Way R, Templeton H, Ball D, Cheng MH, Tobet S
A Microphysiological System for Studying Barrier Health of Live Tissues in Real Time.
Res Sq: 2024 Apr 12;
[PubMed:38659839] [DOI] ( e)

Camacho KG, Moore DCBC, Junqueira-Marinho MF, Gomes Junior SC, Reis AT, Abramov DM
Lockdown during the COVID-19 pandemic: lessons from a polarized scenario in Brazil.
Front Psychol: 2024, 15;1310594
[PubMed:38659692] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Antoniou PE, Varella A, Pickering JD, Chatzimallis C, Moumtzi V, Bamidis PD
Thematic analysis of stakeholder perceptions for co-creative healthcare XR resource design and development; traversing a minefield of opportunities.
Front Digit Health: 2024, 6;1341349
[PubMed:38659657] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Loganathan A, Bozdogan B, Manohar P, Nachimuthu R
Phage-antibiotic combinations in various treatment modalities to manage MRSA infections.
Front Pharmacol: 2024, 15;1356179
[PubMed:38659581] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Larsen RE, Hole K, Selle ML, Johannessen Landmark C, Krogstad T, Holm LB
Access to a tailored mobile application enhances medication adherence among young users of antidepressants.
Front Pharmacol: 2024, 15;1379700
[PubMed:38659579] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Saleh LM, Aly MG, Alhedaithy A, AlAli S
Tympanostomy Tube Insertion Versus Myringotomy or Observation in Managing Otitis Media With Effusion Following Radiotherapy for Nasopharyngeal Carcinoma: An Updated Review.
Cureus: 2024 Mar, 16(3);e56905
[PubMed:38659557] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Jung S, Sul H, Oh D, Jung YG, Lee J, Hyun SH
Slow freezing cryopreservation of Korean bovine blastocysts with an additional sucrose pre-equilibration step.
Front Vet Sci: 2024, 11;1400899
[PubMed:38659455] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lin ST, Li HJ, Li YZ, Chen QQ, Ye JY, Lin S, Cai SQ, Sun JG
Diagnostic performance of contrast-enhanced mammography for suspicious findings in dense breasts: A systematic review and meta-analysis.
Cancer Med: 2024 Apr, 13(8);e7128
[PubMed:38659408] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Seo YE, Lim CJ, Lim JW, Kim JS, Oh HH, Ma KY, You GR, Im CM, Lee BC, Joo YE
Successful Transcatheter Arterial Embolization of Abdominal Wall Hematoma from the Left Deep Circumflex Iliac Artery after Abdominal Paracentesis in a Patient with Liver Cirrhosis: Case Report and Literature Review.
Korean J Gastroenterol: 2024 Apr 25, 83(4);167-171
[PubMed:38659254] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Pritchard P, Robinson N, Saul A, Shrubb J, Stavisky J, Dean R
Horse owner perceptions of equine veterinary nursing roles in the United Kingdom.
Vet Rec: 2024 Apr 24;e4148
[PubMed:38659211] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sun Z, Kong Y, Lan L, Meng Y, You T, Pauer R, Wang H, Zhang Y, Tang M, deMello A, Liang Y, Hu J, Wang J
A High Efficiency, Low Resistance Antibacterial Filter Formed by Dopamine-Mediated In Situ Deposition of Silver onto Glass Fibers.
Small: 2024 Apr 24;e2301074
[PubMed:38659180] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sun J, Pan W
Self-Correction or Other-Correction: The Effects of Source Consistency and Ways of Correction on Sharing Intention of Health Misinformation Correction.
Health Commun: 2024 Apr 24;1-11
[PubMed:38659151] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Pretorius K, Kang S, Choi E
Photos Shared on Facebook in the Context of Safe Sleep Recommendations: Content Analysis of Images.
JMIR Pediatr Parent: 2024 Apr 23, 7;e54610
[PubMed:38659146] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Prochazkova M, Dreyzin A, Shao L, Garces P, Cai Y, Shi R, Pelayo A, Kim YS, Pham V, Frodigh SE, Fenton S, Karangwa C, Su Y, Martin K, Zhang N, Highfill SL, Somerville RP, Shah NN, Stroncek DF, Jin P
Deciphering the importance of culture pH on CD22 CAR T-cells characteristics.
J Transl Med: 2024 Apr 24, 22(1);384
[PubMed:38659083] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jenabzadeh T, Bohner L, Köppe J, Kleinheinz J, Hanisch M, Oelerich O
Temporomandibular disorders in individuals with Marfan syndrome: an exploratory analysis.
Head Face Med: 2024 Apr 24, 20(1);26
[PubMed:38659050] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Namazi SA, Sadeghi S
The immediate impacts of TV programs on preschoolers' executive functions and attention: a systematic review.
BMC Psychol: 2024 Apr 24, 12(1);226
[PubMed:38659021] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Sיhafran Tikva S, Gabay G, Shkoler O, Kagan I
Association of quality of nursing care with violence load, burnout, and listening climate.
Isr J Health Policy Res: 2024 Apr 24, 13(1);22
[PubMed:38659017] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Naamneh R, Bodas M
The effect of electronic medical records on medication errors, workload, and medical information availability among qualified nurses in Israel- a cross sectional study.
BMC Nurs: 2024 Apr 24, 23(1);270
[PubMed:38658976] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Dani S, Schütz K, Dikici E, Bernhardt A, Lode A
The effect of continuous long-term illumination with visible light in different spectral ranges on mammalian cells.
Sci Rep: 2024 Apr 24, 14(1);9444
[PubMed:38658667] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Krishna KV, Balasubramanian B, Park S, Bhattacharya S, Kadanthottu Sebastian J, Liu WC, Pappuswamy M, Meyyazhagan A, Kamyab H, Chelliapan S, Malaviya A
Conservation of Endangered Cordyceps sinensis Through Artificial Cultivation Strategies of C. militaris, an Alternate.
Mol Biotechnol: 2024 Apr 24;
[PubMed:38658470] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Subbarayan R, Murugan Girija D, Raja STK, Krishnamoorthy A, Srinivasan D, Shrestha R, Srivastava N, Ranga Rao S
Conditioned medium-enriched umbilical cord mesenchymal stem cells: a potential therapeutic strategy for spinal cord injury, unveiling transcriptomic and secretomic insights.
Mol Biol Rep: 2024 Apr 24, 51(1);570
[PubMed:38658405] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Parecha D, Alfano A, Cimini D, Schiraldi C
Vegan grade medium component screening and concentration optimization for the fermentation of the probiotic strain Lactobacillus paracasei IMC 502® using Design of Experiments.
J Ind Microbiol Biotechnol: 2024 Apr 24;
[PubMed:38658186] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Murtomäki A, Helevä A, Torkki P, Haukka J, Julkunen-Iivari A, Lemmetyinen R, Mäkelä M, Dietz A, Nuutinen M, Toppila-Salmi S
Comorbidities of chronic rhinosinusitis in children and adults.
Clin Transl Allergy: 2024 Apr, 14(4);e12354
[PubMed:38658181] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

So KC, Kam KK, Tang GHL, Lee APW
Feasibility of Using TriClip Guide for Combined MitraClip and TriClip Transcatheter Edge-to-Edge Repair: First-in-Human Experience.
JACC Cardiovasc Interv: 2024 Apr 22, 17(8);1071-1072
[PubMed:38658124] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Wackett LP
Microwell fluoride assay screening for enzymatic defluorination.
Methods Enzymol: 2024, 696;65-83
[PubMed:38658089] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Wen X, Brothers T, Ward KE, Kogut S
Reducing the risks of prenatal opioid exposure in children.
BMJ: 2024 Apr 24, 385;q803
[PubMed:38658037] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Alsafar FA, Alsaad AJ, Albukhaytan WA
Prevalence of adult attention deficit hyperactivity disorder (ADHD) among medical students in the Eastern Province of Saudi Arabia.
Saudi Med J: 2024 Apr, 45(4);397-404
[PubMed:38657995] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Viegas C, Peixoto C, Gomes B, Dias M, Cervantes R, Pena P, Slezakova K, Pereira MDC, Morais S, Carolino E, Twarużek M, Viegas S, Caetano LA
Assessment of Portuguese fitness centers: bridging the knowledge gap on harmful microbial contamination with focus on fungi.
Environ Pollut: 2024 Apr 22;123976
[PubMed:38657893] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Henning P, Westerlund A, Horkeby K, Lionikaite V, Nilsson KH, Movérare-Skrtic S, Conaway HH, Lerner UH
VITAMIN A ENHANCED PERIOSTEAL OSTEOCLASTOGENESIS IS ASSOCIATED WITH INCREASED NUMBER OF TISSUE-DERIVED MACROPHAGES/OSTEOCLAST PROGENITORS.
J Biol Chem: 2024 Apr 22;107308
[PubMed:38657862] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tod NP, Vogelauer M, Cheng C, Karimian A, Schmollinger S, Camacho D, Kurdistani SK
The role of histone H3 leucine 126 in fine-tuning the copper reductase activity of nucleosomes.
J Biol Chem: 2024 Apr 22;107314
[PubMed:38657861] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhao K, Wang S, Bai M, Wang S, Li F
Distribution, seasonal variation and ecological risk assessment of phthalates in the Yitong River, a typical urban watercourse located in Northeast China.
Sci Total Environ: 2024 Apr 22;172696
[PubMed:38657800] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Abuhassan Q, Silva MI, Tamimi RA, Khadra I, Batchelor HK, Pyper K, Halbert GW
A novel simulated media system for in vitro evaluation of bioequivalent intestinal drug solubility.
Eur J Pharm Biopharm: 2024 Apr 22;114302
[PubMed:38657741] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

McCready D, Arem H, Duarte DA, Dennis K, Ball N, Cafferty LA, Hinds P, Howlader A, Berg CJ
A digital, coach-assisted intervention to address the psychosocial needs of young adult cancer survivors: Randomized controlled trial protocol and intervention adaptation process.
Contemp Clin Trials: 2024 Apr 22;107545
[PubMed:38657732] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Cerda Á, Gonzalez M, Rodríguez C, González H, Serrano J, Leiva E
Feammox bacterial biofilm formation in HFMB.
Chemosphere: 2024 Apr 22;142072
[PubMed:38657691] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wen Y, Yang L, Li X, Ma X, Pang Y
Combined percutaneous-endoscopic puncture rendezvous technique for biliary-enteric anastomotic occlusion after pancreaticoduodenectomy.
Endoscopy: 2024 Dec, 56(S 01);E364-E365
[PubMed:38657673] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Nakamura J, Hikichi T, Hashimoto M, Kato T, Yanagita T, Takagi T, Ohira H
Pull-back myotomy to prevent mucosal injury during peroral endoscopic myotomy for jackhammer esophagus.
Endoscopy: 2024 Dec, 56(S 01);E362-E363
[PubMed:38657672] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Tanisaka Y, Mizuide M, Fujita A, Shin T, Sugimoto K, Jinushi R, Ryozawa S
Peroral cholangioscopy-guided lithotripsy using a novel thin cholangioscope under balloon enteroscopy for Roux-en-Y anastomosis.
Endoscopy: 2024 Dec, 56(S 01);E360-E361
[PubMed:38657671] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Zhang R, Yu T, Ji R
Kill two birds with one stone: Flexible cholangioscopy for treatment of common bile duct stone and identification of suspicious gallbladder wall thickening.
Endoscopy: 2024 Dec, 56(S 01);E358-E359
[PubMed:38657670] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Zeng J, Deng Z, Ding S
Difficult management of pancreatic pseudocyst drainage in a 4-year-old child.
Endoscopy: 2024 Dec, 56(S 01);E356-E357
[PubMed:38657669] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Olabintan O, Voulgaris T, Ayubi H, Thrumurthy S, Haji A, Hayee B
Endoscopic sutured purse-string resection: a novel technique for resection of large gastric subepithelial lesions.
Endoscopy: 2024 Dec, 56(S 01);E352-E353
[PubMed:38657668] [WorldCat.org: ISSN ESSN ] [DOI] ( o)


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

Retrieved from "http://www2.unil.ch/cbg/index.php?title=ISA&oldid=4616"