Difference between revisions of "UNIL BSc course: Bioinformatics Projects 2024"
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* Coordinator: [[Sven Bergmann]] | * Coordinator: [[Sven Bergmann]] | ||
| − | * Concept | + | * Concept: This course is part of the Bsc3 Module 6 "Modelling in Biology and Bioinformatics". Similar to our optional [[UNIL BSc course: Solving Biological Problems that require Math 2024]]: |
| − | This course is part of the Bsc3 Module 6 "Modelling in Biology and Bioinformatics". | + | ** students work in small groups on individual project supervised by a tutor |
| − | ** | + | ** the idea is to "learn by doing" in the context of a real bioinformatics challenge |
| + | ** besides getting Hans-on experience students will also practise presenting their results | ||
* [[Useful tools]] | * [[Useful tools]] | ||
* Dates and Deadlines | * Dates and Deadlines | ||
| − | ** First joint meeting (introducing the available projects): Monday, April 29, 15: | + | ** First joint meeting (introducing the available projects): Monday, April 29, 15:15 (GEN/A) |
| − | ** Intermediate meeting (reporting first results): | + | ** First meeting with tutor (May 2, 14:15 or by arrangement) |
| + | ** First block of practical work: May 14, 16, 21, 22 | ||
| + | ** Intermediate meeting (reporting first results): Wednesday, May 22, 14:15 (BIO/Amphi) | ||
| + | ** Second block of practical work: May 27, 28, 29 | ||
** Final meeting (students present project outcomes): Thursday, May 30, 14:15 (BIO/Amphi) | ** Final meeting (students present project outcomes): Thursday, May 30, 14:15 (BIO/Amphi) | ||
| − | * Projects | + | * Projects & Supervisors |
| − | + | ** see this [https://docs.google.com/spreadsheets/d/1bVvRIgJCwASJj8vPBJbvV7cAOgmscfjGx9pFmGh0DUw/edit?usp=sharing google sheet] | |
| − | |||
| − | |||
| − | ** | ||
* [[Grading]] | * [[Grading]] | ||
* [[How to upload files and edit your project page]] | * [[How to upload files and edit your project page]] | ||
| + | |||
| + | == Projects wiki == | ||
| + | ''Create a page for your project by editing this page and typing "[[project name]]" and a new page is automatically created'' | ||
| + | |||
| + | [[Modelling pathways crosstalks as closed walks and cycles on graphs]] Supervisor: Miljan Petrovic. | ||
| + | |||
| + | [[Application of Wright-Fisher model for recombination landscapes]] Supervisor: Diego Hartasanchez Frenk. | ||
| + | |||
| + | [[File:Mice_Cage_Effects_EsmaBoudemagh.pdf|Which unwanted factors influence laboratory mice?]] Supervisor: Frédéric Schütz. | ||
| + | |||
| + | [[Tracking substitution rate through simulation in a Wright-Fisher model]] Supervisor: Thibault Latrille | ||
| + | |||
| + | "[[HMM based classification for conserved SNARE protein domains]]" Supervisor: Carlos Pulido Quetglas | ||
| + | |||
| + | [[Automated Pupil Data Recosntruction using DL]] Supervisor: Mattia Tomasoni | ||
| + | |||
| + | [[Classify Rab proteins (GTPases) using ML approach]] Supervisor: Deepak Yadav | ||
| + | |||
| + | [[Modeling microbial ecosystem stability through metabolite leakage]] Supervisor: Snorre Sulheim | ||
| + | |||
| + | [[File:Report Automated annotation of MHC binding motifs.pdf|Automated annotation of MHC binding motifs]] | ||
| + | Supervisor: Tadros Daniel | ||
Latest revision as of 16:15, 22 August 2024
- Coordinator: Sven Bergmann
- Concept: This course is part of the Bsc3 Module 6 "Modelling in Biology and Bioinformatics". Similar to our optional UNIL BSc course: Solving Biological Problems that require Math 2024:
- students work in small groups on individual project supervised by a tutor
- the idea is to "learn by doing" in the context of a real bioinformatics challenge
- besides getting Hans-on experience students will also practise presenting their results
- Useful tools
- Dates and Deadlines
- First joint meeting (introducing the available projects): Monday, April 29, 15:15 (GEN/A)
- First meeting with tutor (May 2, 14:15 or by arrangement)
- First block of practical work: May 14, 16, 21, 22
- Intermediate meeting (reporting first results): Wednesday, May 22, 14:15 (BIO/Amphi)
- Second block of practical work: May 27, 28, 29
- Final meeting (students present project outcomes): Thursday, May 30, 14:15 (BIO/Amphi)
- Projects & Supervisors
- see this google sheet
Projects wiki
Create a page for your project by editing this page and typing "project name" and a new page is automatically created
Modelling pathways crosstalks as closed walks and cycles on graphs Supervisor: Miljan Petrovic.
Application of Wright-Fisher model for recombination landscapes Supervisor: Diego Hartasanchez Frenk.
File:Mice Cage Effects EsmaBoudemagh.pdf Supervisor: Frédéric Schütz.
Tracking substitution rate through simulation in a Wright-Fisher model Supervisor: Thibault Latrille
"HMM based classification for conserved SNARE protein domains" Supervisor: Carlos Pulido Quetglas
Automated Pupil Data Recosntruction using DL Supervisor: Mattia Tomasoni
Classify Rab proteins (GTPases) using ML approach Supervisor: Deepak Yadav
Modeling microbial ecosystem stability through metabolite leakage Supervisor: Snorre Sulheim
File:Report Automated annotation of MHC binding motifs.pdf Supervisor: Tadros Daniel
