Difference between revisions of "UNIL BSc course: Bioinformatics for Genomics 2020"
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**1 April 2020, 08:00-12:00: Session 5: "Networks" | **1 April 2020, 08:00-12:00: Session 5: "Networks" | ||
| − | Each slot of 4h will start with a lecture of ~2h, followed by an exercise session. | + | Each slot of 4h will start with a lecture of ~2h, followed by an exercise session. |
| − | |||
This semester all lectures and exercises will be given online. Live sessions at the above times will be given via Zoom. | This semester all lectures and exercises will be given online. Live sessions at the above times will be given via Zoom. | ||
Revision as of 09:22, 19 March 2020
- Course aims:
- Get to know some of the the bioinformatics methods necessary for genomic analysis
- Use these methods on simple real cases
- Develop an understanding of potential pitfalls and the impact of bioinformatics choices in genomic results
- Prerequisites:
- Notions of genomics (gene, genome, transcriptome)
- Basic statistics (what is a test, a p-value)
- Basic literacy in R and/or Python.
- Teacher: Sven Bergmann
- Schedule
- 23 March 2020, 08:00-12:00: Session 1: "RNA-seq & DE"
- 24 March 2020, 08:00-12:00: Session 2: "Clustering"
- 30 March 2020, 08:00-12:00: Session 3: "Biclustering"
- 31 March 2020, 08:00-12:00: Session 4: "More data"
- 1 April 2020, 08:00-12:00: Session 5: "Networks"
Each slot of 4h will start with a lecture of ~2h, followed by an exercise session. This semester all lectures and exercises will be given online. Live sessions at the above times will be given via Zoom.
- Lecture presentations
- "RNA-seq & DE": File:Lecture1.ppt
- "Clustering": File:Lecture2.ppt
- "Biclustering": File:Lecture3.ppt
- "More data": File:Lecture4.ppt
- "Networks": File:Lecture5.ppt
- Exercise material
- "RNA-seq & DE": File:Exercise1.zip
- "Clustering": File:Exercise2.zip
- "Biclustering": exercise3.zip
- "More data": File:Exercise4.zip
- "Networks": exercise5.zip
