UNIL BSc course: Bioinformatics Projects 2024

• Coordinator: Sven Bergmann
• Concept: This course is part of the Bsc3 Module 6 "Modelling in Biology and Bioinformatics". Similar to our optional UNIL BSc course: Solving Biological Problems that require Math 2024:
  • students work in small groups on individual project supervised by a tutor
  • the idea is to "learn by doing" in the context of a real bioinformatics challenge
  • besides getting Hans-on experience students will also practise presenting their results

• Useful tools
• Dates and Deadlines
  • First joint meeting (introducing the available projects): Monday, April 29, 15:15 (GEN/A)
  • First meeting with tutor (May 2, 14:15 or by arrangement)
  • First block of practical work: May 14, 16, 21, 22
  • Intermediate meeting (reporting first results): Wednesday, May 22, 14:15 (BIO/Amphi)
  • Second block of practical work: May 27, 28, 29
  • Final meeting (students present project outcomes): Thursday, May 30, 14:15 (BIO/Amphi)

• Projects & Supervisors
  • see this google sheet

• Grading
• How to upload files and edit your project page

Projects wiki

Create a page for your project by editing this page and typing "project name" and a new page is automatically created

Modelling pathways crosstalks as closed walks and cycles on graphs Supervisor: Miljan Petrovic.

Application of Wright-Fisher model for recombination landscapes Supervisor: Diego Hartasanchez Frenk.

Which unwanted factors influence laboratory mice? Supervisor: Frédéric Schütz.

Tracking substitution rate through simulation in a Wright-Fisher model Supervisor: Thibault Latrille

"HMM based classification for conserved SNARE protein domains" Supervisor: Carlos Pulido Quetglas

Automated Pupil Data Recosntruction using DL Supervisor: Mattia Tomasoni

Classify Rab proteins (GTPases) using ML approach Supervisor: Deepak Yadav

Modeling microbial ecosystem stability through metabolite leakage Supervisor: Snorre Sulheim