UNIL BSc course: Bioinformatics for Genomics 2020

• Course aims:
  • Get to know some of the the bioinformatics methods necessary for genomic analysis
  • Use these methods on simple real cases
  • Develop an understanding of potential pitfalls and the impact of bioinformatics choices in genomic results

• Prerequisites:
  • Notions of genomics (gene, genome, transcriptome)
  • Basic statistics (what is a test, a p-value)
  • Basic literacy in R and/or Python.

• Teacher: Sven Bergmann

• Assistants
  • Reyhan
  • Mattia
  • Bita
  • Anneke
  • Daniel
  • Micha

• Schedule
  • 23 March 2020, 08:00-12:00: Session 1: "RNA-seq & DE"
  • 24 March 2020, 08:00-12:00: Session 2: "Clustering"
  • 30 March 2020, 08:00-12:00: Session 3: "Biclustering"
  • 31 March 2020, 08:00-12:00: Session 4: "More data"
  • 1 April 2020, 08:00-12:00: Session 5: "Networks"

Each slot of 4h will start with a lecture of ~2h, followed by an exercise session. This semester all lectures and exercises will be given online. Live sessions at the above times will be given via Zoom.

• Lecture presentations
  • "RNA-seq & DE": slides
  • "Clustering": slides
  • "Biclustering": slides
  • "More data": slides
  • "Networks": slides

• Exercise material
  • "RNA-seq & DE": File:Exercise1.zip
  • "Clustering": File:Exercise2.zip
  • "Biclustering": exercise3.zip
  • "More data": File:Exercise4.zip
  • "Networks": exercise5.zip