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Aitana Morton de LachapelleAnalyisis of RNAseq dataAnalysis of cell type and tissue-specific regulatory networks
Bias in de novo germline mutation ratesBioMathProject2016 Identification of disease associated pseudogenesBioMathProject2016 Investigating gene expression across the cell cycle using single-cell RNA-seq data
BioMathProject2016 The Facebook of genes: expanding known pathways using network informationCIG-DGM joint seminar: "Genome-wide Association Studies"
Calcium Meta-AnalysisCan environment modify genetic effects on human anthropometric traits?Can environmental factors modify the effect of genes influencing blood pressure?
CellophaneComputational Biology Group Wiki:AboutConcept
ConferencesContactControl of mitosis in fission yeast
Course idea and teaching goals of Case studies in Bioinformatics
Current dynamics of the Lausanne population geneticsDaniel Marbach
Dates & Deadlines 2009Dates & Deadlines 2010
Dates & Deadlines 2011Dates & Deadlines 2012Dates & Deadlines 2013
Dates & Deadlines 2014Dates & Deadlines 2015Dates & Deadlines 2016
Discordance analysisDiscordance of LDL-C with ApoB and the presence of cardiovascular diseaseDiscordance of LDL-C with ApoB and the presence of coronary artery disease
Discovery of phenotypes influenced by the season of birthEISA and the biclust packageEISA module trees
EISA tutorialEPFL doctoral course: "Functional Genomics 2009"EPFL doctoral course: "Functional Genomics 2010"
EPFL doctoral course: "Functional Genomics 2011"EPFL doctoral course: "Functional Genomics 2012"
Ensemble pathway discoveryEstimating selection pressure on different genomic regions
Evolution: Estimating rate of speciation and extinction in a tropical plantEvolution of Gene Expression Levels in Mammalian OrgansEvolution of polymorphism in plants
Evolution of seed size in relation to dispersal agentExpressionView
ExpressionView File FormatExpression studiesFeature Requests
Final report meetingFinal report meeting 2010Final report meeting 2012
Final report meeting 2013GIANT heightGMM
GWAS projectGender bias in neurodevelopmental disordersGenes reflect geography
Genetic determinants of eating patternsGenetics of allostatic load in the CoLaus studyGenetics of eating patterns
Genetics of liver enzymes levelsGenetics of urinary calcium levelsGenome-wide association studies on various clinical phenotypes
Genome Wide Association StudiesGenomic studies: databases and toolsGenomic studies: exercises
Genomic studies: theoryGetting started with ExpressionViewGolden rules for a good presentation
GradingGroup MeetingGuidelines for a successful stay at the CBG
HistoryHow to upload files and edit your project pageHow well does sequence similarity predict similarity in binding specificity?
Hypergenes StudyHypoPhen
ICP softwareISA
ISA internalsISA tutorialIdentification of obesity and BMI associated intergenic long noncoding RNAs
Inference of Overall Heritability Captured by GWA-DataIntegrative AnalysisIntermediate report meeting
Intermediate report meeting 2010Intermediate report meeting 2011Intermediate report meeting 2012
InternalIntroduction to dynamical systems and differential equationsJacques Beckmann
Johann WeberJournal ClubJournal Club (2014-2015)
Journal Club (autumn 2013)Journal Club (autumn 2015)Journal Club (autumn 2016)
Journal Club (spring 2012)Journal Club (spring 2013)Journal Club (spring 2014)
Journal Club (spring 2016)Kinematics of seedling elongationLab mouse phylogeny
Long Range Dpp Gradient Formation
MetabolomicsMetabolomics— Linking Genotype and Phenotype
MetabomatchingMicroarray data analysis of the shade avoidance in plantsMitose cellulaire dans les levures: étude des effets géométriques sur la formation du gradient de Pom1
Modeling: Pattern formation using Reaction-Diffusion modelsModeling: Spread of epidemicsModeling gradient formation in the fission yeast
Modeling morphogen gradient formationModeling of gradient formation in "Drosophila" embryosModule 1: Is the hourglass model for gene expression really supported by the data?
Module 2: How well does sequence similarity predict similarity in binding specificity?Module 3: How to make valid prognostic models with gene expression signatures?Module 3: Mauro's project
Module 4: How do "our expectations" confound the results of our analyses?Module 4: How does feature selection impact integrative clustering analysis?Molecular constraints of the Major histocompatibility complex I (MHC I) protein
Morphogenèse: modélisation de la formation de gradients de diffusionMurielle BochudNOFIA
NarcolepsyNeuroenergetics: Importance of transport for the regulation of energy substrate fluxes in brain cellsNeuroenergetics: Modeling of brain cell metabolic phenotypes
Nicolas/Anna: TBAOptimizing gene scores for pathway enrichmentOrdering algorithm used in ExpressionView
Other BioC packagesPackaging matlab to standalonePascal
PascalTestDataPathway Analyisis of GWAS dataPathway enrichment in DNAse1 footprinting data
PeoplePhototropism in ArabidopsisPictures
PojectYeastPositionsPrioritizing genes via network enrichment
Regulatory CircuitsRegulatory network of the shade avoidanceRobust gradient formation
Robust inference of gene regulatory networks using bootstrappingRobustness in Drosophila embryo patterningRunning ISA in parallel
SIB Young Bioinformatician award 2010SIB course: "Statistical analysis applied to genome and proteome analyses"SIB course on “Statistical genomics and statistical genetics”
SIB winter-school on “Clinical Bioinformatics”SPSW 2012 summer school exercise sessionSandbox
Sandbox2Schedule for Case studies in Bioinformatics 2015Schedule for Case studies in Bioinformatics 2016
Speciation and extinction rate estimation using phylogenetic treesStatistics of cell size determination in fission yeastStatistics of cell size determination in fission yeast - pom1 and cdr2
Statistics of cell size determination in fission yeast - the pom1 gradientSummer school course: "Biologie und Medizin im digitalen Zeitalter: Jenseits der Disziplinen"Summerschool of the Max-Weber Stiftung
Sven summer-school ”From Data to Models in Biological Systems”Teaching
TestMaiaKaplanTissue specific expression with the Iterative Signature Algorithm
Total Explained VarianceTree of Life: Inferring species phylogenies based on entire proteomesUHTS
UNIL BSc course: "Experimental design 2009"UNIL BSc course: "Experimental design 2010"
UNIL BSc course: "GGE course module on Genome-wide association studies"UNIL BSc course: "Solving Biological Problems that require Math 2009"
UNIL BSc course: "Solving Biological Problems that require Math 2010"UNIL BSc course: "Solving Biological Problems that require Math 2011"UNIL BSc course: "Solving Biological Problems that require Math 2012"
UNIL BSc course: "Solving Biological Problems that require Math 2013"UNIL BSc course: "Solving Biological Problems that require Math 2014"UNIL BSc course: "Solving Biological Problems that require Math 2015"
UNIL BSc course: "Solving Biological Problems that require Math 2016"
UNIL Biomedical Master: "Metabolic diseases 2010"UNIL Biomedical Master: "Metabolic diseases 2011"UNIL MSc course: "Cartographie, séquençage et structure des génomes 2007"
UNIL MSc course: "Cartographie, séquençage et structure des génomes 2008"UNIL MSc course: "Case studies in bioinformatics 2015"
UNIL MSc course: "Case studies in bioinformatics 2016"UNIL MSc course: "Genes: from sequence to function 2009"
UNIL PhD literature seminar: "Diffusion and scaling during early embryonic pattern formation"
UNIL PhD literature seminar: "Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls"UNIL PhD literature seminar: "Optimality and evolutionary tuning of the expression level of a protein"UNIL PhD literature seminar: "Systematic interpretation of genetic interactions using protein networks"
UNIL PhD seminar: "Bi-weekly meeting for graduate students in biostatistics and computational biology"UNIX recipesUncovering modes of evolution: testing for selection versus genetic drift in species diversification
Useful toolsVital-ITVnc
WelcomeWelcome infoWhole genome association study: Alcohol consumption in the Cohorte Lausannoise
Whole genome association study: Tobacco consumption in the Cohorte LausannoiseWikiFAQWikiIssues
WingX: Systems Biology of the Drosophila Wing